Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0739 ATGAAGATGAAGCAAGCCAACCCATCAGCCCCTTCCCCTTCTCTTCTCTTCTTTTTTATCCTAACTCTATCGGTGATAGAACTATCCGCCGGAGACCCCAGATCACGAACGATCCAAATGATGTGCGGGAACCAGCGTGAGCACAATTCAACCATCTTCGTCATCAACTTTGTGGCTATGATGGAAAATATCAGTAATCAAATGCGCACTTCTGGTTTTGGCGTGGCTGTTCTTGGCTCTGCACCTGATGCTACCTATGGTCTTGCCCAATGCTATGGAGATCTGTCTTTGCTTGATTGTGTATTATGCTACGCTGAGGCGCGAACATTTCTTCCCCAGTGCTTTCCTTTCACTACGGGTCGCATTTACCTTGATGGTTGCTTTATGCGAGCTCAAAATTACAGCTTCATTGAGGAGTATACAGGACCAAGTGACCATGCTTTGTGTGGAAACGAAACCCGAAAGAACTCCACGTTCCAGGAGTCTGCAAGGCAGGCTATAAAGCAAGCAGTTGCTGATGCACCAAACAATAATGGGTATGCAAGGAGTAAGGTGATGGTGCCGGGAACAGCAAATGAGTCGGCCTATGTGCTGGCTAATTGCTGGAGGACTTTGAATGCAATATCATGTAGGGCGTGTCTGGAGAATGCATCGTCATCGATATTGGGATGCTTGCCTTGGTCTGAAGGGCGGGCACTGAACACAGGGTGCTTCATGAGATACTCAGATACAGATTTCCTCAACAAAGAACCAGATAATGGAAGTTCAAGGGGGACCATAATAATAATAGTAGTATCTGCTGTAAGTGCTGTGATTGTTCTTCTAGTAGGGGGAGCGATTGGAGTTTATATCTTGAAGCAAAGAAAGATCCAAAAGAAAAGGAGAGGTTCCAACGATGCTATAAAATTAGTTAAGACCCTCCATGACAGTAGCTTGAACTTCAAATATGCTACACTTGAGAAGGCCACAGGATCTTTTGACAATGCCAACAAGCTTGGACAAGGAGGATTTGGAACTGTTTATAAGGGAGTTCTGGCTGATGGAAGAGAGATTGCTGTGAAGAGGCTTTTCTTTAACAACAGACACAGAGCAGCAGATTTCTATAATGAAGTTAACATAATAAGCAGTGTTGAGCACAAAAATCTAGTCAGGCTGTTGGGATGCAGTTGCTCAGGGCCTGAAAGCCTTCTCATCTATGAATTTCTGCCAAATAAGAGTCTTGATCGCTTCATCTTCGGTAATTACTAG 1248 0.4447 MKMKQANPSAPSPSLLFFFILTLSVIELSAGDPRSRTIQMMCGNQREHNSTIFVINFVAMMENISNQMRTSGFGVAVLGSAPDATYGLAQCYGDLSLLDCVLCYAEARTFLPQCFPFTTGRIYLDGCFMRAQNYSFIEEYTGPSDHALCGNETRKNSTFQESARQAIKQAVADAPNNNGYARSKVMVPGTANESAYVLANCWRTLNAISCRACLENASSSILGCLPWSEGRALNTGCFMRYSDTDFLNKEPDNGSSRGTIIIIVVSAVSAVIVLLVGGAIGVYILKQRKIQKKRRGSNDAIKLVKTLHDSSLNFKYATLEKATGSFDNANKLGQGGFGTVYKGVLADGREIAVKRLFFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLIYEFLPNKSLDRFIFGNY* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0739 415 ProSiteProfiles Protein kinase domain profile. 326 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0739 415 Gene3D Phosphorylase Kinase; domain 1 286 401 - -
Vvi1g0739 415 FunFam Cysteine-rich receptor-like protein kinase 3 145 246 - -
Vvi1g0739 415 Gene3D - 34 136 IPR038408 -
Vvi1g0739 415 Gene3D - 145 246 IPR038408 -
Vvi1g0739 415 Pfam Protein tyrosine and serine/threonine kinase 329 411 IPR001245 GO:0004672|GO:0006468
Vvi1g0739 415 ProSiteProfiles Gnk2-homologous domain profile. 35 136 IPR002902 -
Vvi1g0739 415 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Vvi1g0739 415 ProSiteProfiles Gnk2-homologous domain profile. 141 246 IPR002902 -
Vvi1g0739 415 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 86 413 - -
Vvi1g0739 415 SUPERFAMILY Protein kinase-like (PK-like) 305 415 IPR011009 -
Vvi1g0739 415 Pfam Salt stress response/antifungal 47 134 IPR002902 -
Vvi1g0739 415 Pfam Salt stress response/antifungal 152 243 IPR002902 -
Vvi1g0739 415 FunFam Cysteine-rich receptor-like protein kinase 2 35 136 - -
Vvi1g0739 415 FunFam Putative DUF26-domain receptor-like protein kinase family protein 294 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0739 Vvi-Chr1 7490194 7492068 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0739 13 412 Receptor kinase-like Gene Family AT1G70520 67.830 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi1g0739 Stress-antifung 2.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0739 - - vvi:100241439 801.586