Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0738 ATGTATTCTTCTTTCCCTTTTACCTTTTATCCCCTCTGTTTACTACTTTTGTGCTTCTTCATACCCCATTCTCTTTCTGATCCAAGAACTACACAAGTGGCCCTTATATGCTCCAACAGAACCGCATTAATGCCTGAGCGTCAAACTTTCATTGCAAATTTCTTAGAAGCTATGGACCAAGTGACTCCATTGATTAGCACCCAGAGATATGCAGACGTTACCAGTGGAACTGGTAGTACCGCAGTTTTTTTGTTTGGTGAATGCATGGAAGATCTTTCTCAGAATGATTGTAATCTTTGTTTTGCCCTCTGCAAAACCCAACTCCTCAGATGCGTCCCATTCCAAAAGTCCACCCGGGGTGGTAGAAGTTTCTATGATGGGTGCTATATAAGGTATGATGATTATAAATTCTTTGATGAGGCTTTGAGTGCTGAAGACAAGACTGTGTGTGGAACTAAGGATTTTAGTGGAGATCAAACTGTTTTCAGAGCTAATGCTATTGAATTGGTGAGGAACTTGAGTGTTGAAGCGCCTGGGAATGATGGGTTCTTCGTTGGCTCTGTGAATCGAAGTAATATATCAGTGTATGGGTTGGCTCAGTGTTGGGAGTTTGTGAAAGGGAGCGCCTGTGCAGAGTGCTTGGCGAATGCCACCTCAAGGATTGGCTTGTGTCCTCCCAAGGAAGAAGGGAGGGTGTTGAATGCTGGGTGTTACTTGAGGTATTCTACCCAAAAGTTCTATGACAATTCCACGAGTGATTTTGTAGAAGAGAATGAAGGAAGCAGCAGACTAGCTATTATTCTGGGTGTAACTTCATCTTCTTTTGCTCTTTTGCTGATCATCGCGATGACCGTTTTCTTTGTGAGGAAGAAACGTGCAAAGAGGAGGAGAGAAAAAAAGCAACTAGGTGATCTGTTGGCCACTGTGAACAAGTCCAAACTCAATTTCTCATATGAAACTCTTGAGAAGGCCACAAACTACTTCCACCATTCCAATAAACTTGGGCAAGGAGGATCTGGTTCTGTATACAAGGGGATTATGCCGGATGGAAAGGTTGTCGCCATAAAGAGGCTTTTCTTCAATTCAAGACAATGGGTTGATCATTTCTTTAATGAAGTCAATTTGATCAGTGGCATTGACCACAAAAATCTTGTAAAGCTATTAGGATGCAGCATTACAGGTCCTGAAAGCCTTCTTGTTTATGAATATGTGCCAAATCAAAGCCTTCACGATTATCTTGTTAAAAGGAATGCTCCACCTCTAGCATGGGAAATGAGGTATAAAATTCTATTGGGTATAGCTGAGGGCTTGGCCTATCTGCATGAGGAATCTATGTTAAGGATCATACACAGAGACATAAAATTAAGCAATGTTCTGCTTGATGAGGACTTTGCAGCAAAGATTGCTGATTTTGGGCTTGCTAGATTATTTCCAGAAGATAAGACTCACATCAGCACTGCCATTGCAGGCACTCTAGGCTACATGGCTCCAGAATATGTGGTTCGGGGAAAATTGACTGAGAAGGTGGACGTCTATGGTTTTGGAGTCCTTGTTATCGAAGTTGTCTGTGGAAAGAGAAACAATTCCTTCACTCAAGATTCATTCTCTATCCTACAAATGGTTTGGAACCTTTATGGAACTGGACGATTGTATGAAGCTGTTGATCCATCGCTTGGGGGTAACTTTCAAGAAGATATGGCATCTAGAGTACTTAAAGTAGGGCTACTCTGTGTTCAAGCCTCTGCAGAACTGCGTCCATCAATGTCATTAGTTGTGAAAATGCTTACTGAAAACCATGAAACTCCTCAGCCAACGCAGCCACCATTTCTACATTCTGGTAATGCAGAATCCAGTCCATTGGTAAAAGCAGAAACTTCCCATTCCCTGCCCGAGTCCGGCACTCAATCTTCCAAGAATAGCATGACACAAAGCTGGATTGAGCCTAGATGA 1950 0.4236 MYSSFPFTFYPLCLLLLCFFIPHSLSDPRTTQVALICSNRTALMPERQTFIANFLEAMDQVTPLISTQRYADVTSGTGSTAVFLFGECMEDLSQNDCNLCFALCKTQLLRCVPFQKSTRGGRSFYDGCYIRYDDYKFFDEALSAEDKTVCGTKDFSGDQTVFRANAIELVRNLSVEAPGNDGFFVGSVNRSNISVYGLAQCWEFVKGSACAECLANATSRIGLCPPKEEGRVLNAGCYLRYSTQKFYDNSTSDFVEENEGSSRLAIILGVTSSSFALLLIIAMTVFFVRKKRAKRRREKKQLGDLLATVNKSKLNFSYETLEKATNYFHHSNKLGQGGSGSVYKGIMPDGKVVAIKRLFFNSRQWVDHFFNEVNLISGIDHKNLVKLLGCSITGPESLLVYEYVPNQSLHDYLVKRNAPPLAWEMRYKILLGIAEGLAYLHEESMLRIIHRDIKLSNVLLDEDFAAKIADFGLARLFPEDKTHISTAIAGTLGYMAPEYVVRGKLTEKVDVYGFGVLVIEVVCGKRNNSFTQDSFSILQMVWNLYGTGRLYEAVDPSLGGNFQEDMASRVLKVGLLCVQASAELRPSMSLVVKMLTENHETPQPTQPPFLHSGNAESSPLVKAETSHSLPESGTQSSKNSMTQSWIEPR* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0738 649 MobiDBLite consensus disorder prediction 599 649 - -
Vvi1g0738 649 FunFam Cysteine-rich receptor-like protein kinase 2 30 137 - -
Vvi1g0738 649 ProSiteProfiles Protein kinase domain profile. 328 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0738 649 SMART serkin_6 328 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0738 649 ProSiteProfiles Gnk2-homologous domain profile. 143 246 IPR002902 -
Vvi1g0738 649 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Vvi1g0738 649 FunFam Cysteine-rich receptor-like protein kinase 3 146 246 - -
Vvi1g0738 649 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 85 623 - -
Vvi1g0738 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Vvi1g0738 649 Gene3D Phosphorylase Kinase; domain 1 287 403 - -
Vvi1g0738 649 FunFam Cysteine-rich receptor-like protein kinase 2 404 603 - -
Vvi1g0738 649 SUPERFAMILY Protein kinase-like (PK-like) 314 613 IPR011009 -
Vvi1g0738 649 Pfam Salt stress response/antifungal 155 243 IPR002902 -
Vvi1g0738 649 Pfam Salt stress response/antifungal 45 135 IPR002902 -
Vvi1g0738 649 Gene3D Transferase(Phosphotransferase) domain 1 404 607 - -
Vvi1g0738 649 FunFam Cysteine-rich receptor-like protein kinase 2 292 403 - -
Vvi1g0738 649 Gene3D - 30 137 IPR038408 -
Vvi1g0738 649 Gene3D - 145 246 IPR038408 -
Vvi1g0738 649 Pfam Protein kinase domain 328 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0738 649 ProSiteProfiles Gnk2-homologous domain profile. 31 137 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0738 Vvi-Chr1 7469513 7473852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0738 24 492 Receptor kinase-like Gene Family AT1G70530 62.845 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi1g0738 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0738 - - vvi:100253407 1273.07