Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0723 ATGCCCATCGATTCTTCGGTTGTAGCAGACATGGACACACCTTCAGTTTCTTCTCTCACTGTTTCCTCTACTTTGAAGCGTAAAAGGCCCCCCAGCATCCAGATCCCTAAGGTCCTGCAAGAAATTCAAATATCCAGGCCGTCTACTCCTCGAAACGACGCCGTTTCTTTCTGCGGTACTGGGGTTGGTGTTTCCTCCATCAGAGGCAAGAAAAAGTTCATGGAAGATGCCCACAAGATCGTTTCTTGCTCATTCGGTAGCTCCAATAAGGGTTTCTTCGGGGTCTATGACGGGCACGGAGGTAAAATGGCAGCTGACTTTGTCGTTGAGAACCTGCATACCAACATTTTCGAAAAGTTGGAGAATTGTGCAGAAGATACGACCAAGGAGGAGGCTGTTAAAGCAGGGTATCTGAAGACAGATGAGGAGTTCTTGAAACAGGGTTTAAGCAGTGGTGCCTGCTGTGTCACAGCCTTGATTGAAGGAAAGGAAATTGTTATTTCAAACTTGGGGGATTGCAGTGCAGTTCTTTGTAGAGGGGGAGTGGCTGAAGCCCTTACAAAAGATCACAGAGCAGAACAGGAGGATGAACGGAAAAGAATAGAGGAAAAGGGAGGATATGTAGAGATCCACCGAGGAGCTTGGAGAATCCATGGGGTACTTTCCGTTTCTAGAAGTATTGGAGATGCTCATCTGAAGGCTTGGGTGTCTGCTGAACCCGACACAAAAATCCTACATTTGACTCCAGACATGCAATTTCTCGTCTTAGCTTCTGATGGACTGTGGGAAAAGGTTGGCAACCAAGAAGCTGTTGATACGGTGATGCGATCAGGGTCAATTGAAAGAAAACTAGGACCCAGTGGCGGTGGACACTTTCAAAAGGAAAACGATGGAGGATATTTTAGCGTGAACACTAGTCCGGCATCAAAGTTACGCAGGATTTCACTACTCAAGCAACCAAAGACAATGAGTCAGTCTCCAAGCTACAGGATCACTGTTGATAGCCGTAAAGAAATTGAAGAAGACTTTGCCTGTGAAAATGAAAGCCCACCGTCCAAGGCACGCAGGATTTCCCTGGTCAAGCGGCTAAACATGAAGACCCAGTCTCCAAGACAAGAGAAGAGCTACAAGAAGTCGTTTGCTTCTAGTAGACTTGTGGCTGCTTGTAAGGAGCTCATGAACCTTGCCCTAACAAGGGGTGGTTTGGACGACATCACAGTGATGATAATTGACCTCACATGTGACAGCTGA 1251 0.4676 MPIDSSVVADMDTPSVSSLTVSSTLKRKRPPSIQIPKVLQEIQISRPSTPRNDAVSFCGTGVGVSSIRGKKKFMEDAHKIVSCSFGSSNKGFFGVYDGHGGKMAADFVVENLHTNIFEKLENCAEDTTKEEAVKAGYLKTDEEFLKQGLSSGACCVTALIEGKEIVISNLGDCSAVLCRGGVAEALTKDHRAEQEDERKRIEEKGGYVEIHRGAWRIHGVLSVSRSIGDAHLKAWVSAEPDTKILHLTPDMQFLVLASDGLWEKVGNQEAVDTVMRSGSIERKLGPSGGGHFQKENDGGYFSVNTSPASKLRRISLLKQPKTMSQSPSYRITVDSRKEIEEDFACENESPPSKARRISLVKRLNMKTQSPRQEKSYKKSFASSRLVAACKELMNLALTRGGLDDITVMIIDLTCDS* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0723 416 SMART PP2C_4 49 410 IPR001932 -
Vvi1g0723 416 SUPERFAMILY PP2C-like 57 412 IPR036457 -
Vvi1g0723 416 Gene3D - 54 414 IPR036457 -
Vvi1g0723 416 PANTHER PROTEIN PHOSPHATASE 2C 38 411 IPR015655 GO:0004722|GO:0006470
Vvi1g0723 416 ProSitePatterns PPM-type phosphatase domain signature. 92 100 IPR000222 GO:0043169
Vvi1g0723 416 ProSiteProfiles PPM-type phosphatase domain profile. 61 412 IPR001932 -
Vvi1g0723 416 Pfam Protein phosphatase 2C 61 277 IPR001932 -
Vvi1g0723 416 CDD PP2Cc 61 274 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0723 Vvi-Chr1 7249305 7253635 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0723 18 413 PP2C-type Phosphatase Gene Family AT1G67820 51.990 4.72e-126 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0723 - - vvi:100254174 813.913