Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0717 ATGTCGAAAGCTTGGGGAGGGGCCGGTGCCTGGGCGGCCGATGCTGAGAGGGCCGAAGCCGAAGAGCGTGAGCAAGCCGAAGAGCGTCAGCAAGCGGCGGCGGCCGCTGCGGCCGGTTCTCAGGGCTTCCCTAGCCTGAAAGAAGCCGTCGCCAAGCCCAAGAAGAAAAAGATCAGTCTCATGGAGTTCACGATGGGCGTTTACACCGATTCGGGAGGCGACGCGCGCCGGGATTCGCCGATGGAGTACAAGGGTTTGACGCAGGACGAGATGCTTCGGCTTCCTACCGGGCCTAAAGAGCGGTCCGCTGAGGAAATGCAGTACGGTCGACTCGGCGGGGGCTTCCAATCGTATGGCCGGTCTGGCCCACCTTCGAGTCGGACGAGAGATCGAGATGGGGATGGTTCTTGGGGCGGTAATCGGAGGTCTTACGGTGGATTTGATGATGATCGGAGGGCTCCACCCCCTAGGGCTTCGGATTTTGATCAACCTTCTAGGGCCGATGAAGTTGATAACTGGGCAATGGCAAAGAAACCTCTTCCTTCGCATTCGGTTGATCCAGGACGGCCTAGTCGGTACAGTTCGCTTGGTGTTGGTGGCTCTAGGGCTGACGAGGTTGATAATTGGGCAAGTGGGAAAAAGTCACTTCCTGCTAGAACTTCCAACATCGGTCCGGGGTTTCGCGACTCTGGCCCAGAGCCAGATCGGTGGAGTAGGGGAGGATTGCGAGAGGGTGATCGTGAGCGCCCCCGATTGGTTTTGGATCCACCAAAGGGAGAAGTGGTGGGCAGCGAACCAGCAAGGTCGAATAGGCCCAATCCTTTTGGAGCAGCTCGACCTAGGGAAGAAATTTTGGCTGAAAAAGGATTGGATTGGAAGAAGTTGGATTCAGAAATTGAGGCTAAGAAGACAAGTAGGCCAACTAGCTCGCACTCCAGTAGACCTTCGAGTGCACAGTCTAGCCGGTCTGAGGGTCCAATCATACAGAGTTTGGATGGAGCAGCAAAGCCTCGGCCAAAAGTGAACCCTTTTGGAGATGCCAAGCCTAGGGAGGTTTTGCTTGAAGAGCGAGGTAAGGATTGGCGGAAGATTGATAGGGAATTGGAGCATCGAGGTGTTGACAGGCCTCAGACAGAGGAAGAAAAGCTTTTAAAAGAAGAGATAGAGCAGCTAAAGAAAGAATTACAGAATGAGTTGGGTAACAGTGAAGCTGCACTAGCGTCTGGAGGGGCCCAGACCAGTTTACGTGATGAAATTGCTAGCAAAGAAAAAGACTTAGAACAGCTGATCCGCGATTTGGATGACAAAGTTCGTTTTGGTCAGAAAGCCATTGAAAGGCCTGGGTCTGCAGCAGGCAGAGTAGCTGTCTTTCCTGAGAGACCACCCTCTCAGTCTGGATCAGTTGAGGAGTTCAGAAATACAGAGTTCATGGAGAGGCCTCGATCACGTGGTACAGGAGATTTGTGGACAAGACCTGTTGATGACAGAAGAGCTTTCCAAGGTGGTAGAGATAGAGGATTTCTTGGTAACAGAGATCTGGGCAGGTCTAGATCGCGGGAAAGATGGTGA 1569 0.5341 MSKAWGGAGAWAADAERAEAEEREQAEERQQAAAAAAAGSQGFPSLKEAVAKPKKKKISLMEFTMGVYTDSGGDARRDSPMEYKGLTQDEMLRLPTGPKERSAEEMQYGRLGGGFQSYGRSGPPSSRTRDRDGDGSWGGNRRSYGGFDDDRRAPPPRASDFDQPSRADEVDNWAMAKKPLPSHSVDPGRPSRYSSLGVGGSRADEVDNWASGKKSLPARTSNIGPGFRDSGPEPDRWSRGGLREGDRERPRLVLDPPKGEVVGSEPARSNRPNPFGAARPREEILAEKGLDWKKLDSEIEAKKTSRPTSSHSSRPSSAQSSRSEGPIIQSLDGAAKPRPKVNPFGDAKPREVLLEERGKDWRKIDRELEHRGVDRPQTEEEKLLKEEIEQLKKELQNELGNSEAALASGGAQTSLRDEIASKEKDLEQLIRDLDDKVRFGQKAIERPGSAAGRVAVFPERPPSQSGSVEEFRNTEFMERPRSRGTGDLWTRPVDDRRAFQGGRDRGFLGNRDLGRSRSRERW* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0717 522 MobiDBLite consensus disorder prediction 456 522 - -
Vvi1g0717 522 MobiDBLite consensus disorder prediction 308 327 - -
Vvi1g0717 522 MobiDBLite consensus disorder prediction 232 255 - -
Vvi1g0717 522 MobiDBLite consensus disorder prediction 281 307 - -
Vvi1g0717 522 Coils Coil 412 436 - -
Vvi1g0717 522 Coils Coil 378 408 - -
Vvi1g0717 522 MobiDBLite consensus disorder prediction 68 380 - -
Vvi1g0717 522 MobiDBLite consensus disorder prediction 472 522 - -
Vvi1g0717 522 MobiDBLite consensus disorder prediction 15 29 - -
Vvi1g0717 522 MobiDBLite consensus disorder prediction 343 380 - -
Vvi1g0717 522 Pfam Plant specific eukaryotic initiation factor 4B 1 506 IPR010433 GO:0003743
Vvi1g0717 522 MobiDBLite consensus disorder prediction 1 55 - -
Vvi1g0717 522 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 521 IPR010433 GO:0003743
Vvi1g0717 522 Coils Coil 12 38 - -
Vvi1g0717 522 MobiDBLite consensus disorder prediction 144 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0717 Vvi-Chr1 7217134 7229510 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0717 1 522 Eukaryotic Initiation Factors Gene Family AT3G26400 53.779 4.92e-151 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0717 - - vvi:100242447 925.62