Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0708 ATGTTACGTGAAGAAGATAAAGACCGCCTCTCCGGTGGAACGGGGACTCGGAGAGCTTATTTACGGTCAGTTTCTTGGACTGATCGCTCTCCAACGAAACCTCTCCCTAGACCACAGCCAAACAGTAAGGTGAGGTCGTGTCTGCCACCACTTCAGCCTCTTTCAATTTCCCGGCGCAACGCAGAGGAGTGGCCTAGGGCGGGGTCCGATGATCTGGGTGTGTGGCCGCATCCTCCAACCCCTGGGGGGAGATTGGGGTCCATTAAACCCCTTGAGAATTCAAATTCAGAACAACCCCAGAGAGAATTTCAGTTCAAGAGGGATAAGCTTGCCTTCTTTGATAAGGAATGCTCCAGAATTGCAGATCATATATATTTGGGAAGTGATGCTGTTGCTAAGAACCGTGAAACTCTAAGGCAGAATGGTATCACCCATGTCTTGAACTGTGTTGGGTTTGTTTGCCCCGAGTATTTCAAGAGTGATCTTGTTTACAAGACGCTTTGGTTGCAAGATAGCCCATCTGAGGACATCACGAGTATTCTTTATGATGTGTTTGATTACTTTGAGGATGTTAGAGAGCAAGGTGGGCGGGTTCTTGTTCATTGTTGTCAGGGAGTGTCAAGATCGAGCTCTCTGGTCATTGCATATCTCATGTGGAGGGAGGGCCAGAGCTTTGAAGGTGCATTTCAGTATGTGAAAGCAGCCCGAGGAGTGACTAACCCGAATATGGGTTTTGCTTGTCAACTCCTGCAGTGCCAGAAGAGGGTGCATGCTGTACCAGTGAGCCCAAATTCTGTGCTTAGGATGTATCGGATGGCTCCCCACTCTCCATATGATCCTCTTCATCTTGTACCAAAAATGTTAAGCCATCCAGGTACACTAGGACTTGACTCTCGTGGGGCATTTATTGTTCATGTCCCTTCAGCGATATATGTCTGGATTGGGAAGAATTGCAACATGGTGATGTCAAATAATGCAAGAGCAGCTGCCTATCAGGTCATTCGATATGAGAGGGCACAGGGTCCAATTGTGAGTATCAAAGAAGGTGAGGAGACATCTGAATTTTGGGATGCTCTTGCTGGTGGACAACTCTTAGCAGATGGTAGCAACAAAGTGGGTTCCAGAGATGAAAGTAGTTTATCTTCTGAAAAGGATAAAGTTTGTCCTGGGGTTGGCGAAAGGAAAGTTGATGAATACAATCTTGATTTTGAAATTTTCCATAAGGCTCTTGCTGGTGGGGTTGTTCCACCTTTTCCATTATCAGGAACTGGATCTGAGACTTGTCTCCCTGCTAGGGAAAATGGATGGGGTCGACTAAGGCGGAAGTTTACTAGTGGCTTTATGAAGGAATTTGTCACAAAACTGAATTGTGACACCATTCAATCCAGTCATGGAGCAGATATGATTATAGATACTTGTAATGAAGTGAAACAACCCGTTTCCATTTCTAATCCTTTGTCACCATCAACACCTCCATGCGGTTCACCAGATTCACTTCCTTGTTCCCCAAATGGCAGCTCAATTAGCAGTATTGGTAAAGACATGGAACACCCTGTTCCTCTTACTGATCCTTTGTTGTCAGAAACACCTAACTGTGGTTCACCAGATTCTTTCTCTCGTTTTCTGGGTGGTAGCCCTAAGTTCAGTTCCAAATCTCCTTCACTCTCACCTTCGACCTCTGAGTATTCCAGTTCATTTACCTTTTCGCCCTCATCTTCTAATTGGTCCGATTTGTCATACCTTTCTTCTCAACAACCTTCACCTTCCAGCCTCGAGCCCACAGATCCATTCTGTGTGAAGAATGGTTCCTCAGCAGAAGATCCTTGTTTACTTTACAAAGGAACCCAAACTTCACTGGAAGAGGATTTTTCTGCTAATCATGCGCTGAATGGGGCAAATACTTGTTTTCCATGTAAAGGAACCTGCCCCTCCATTGCTGAGCGCAGAGGGAGTAATCCTCCACCTAGGATGTTACTACCCTCAGTTGATGAACCACCTCAAGTGCCTCCGAACCTGGTAAGGTCTTGGTCCTTTTCCTTACCTGATTTGGATGATGTTATGATGAAGGATGTCGATTGTGACCAGTTCGAGCATGAAGGCAATGGAGAAGAGCTAATGTTAGATGGTGAACATTTTGGTACTGGAAATGAGTTAGAAAGTGAGATTGAAGATAAGAAAGTGTATGGTAACTTTTATGTTCCTTTGGGTGATACATCTGATAGGGTTGCAGAAGAAACAAATCTAGCTCTTTACCAGTGGCCTACCATGAATAAAGTGGAGTTGTATAACTTTGGTGTCCTTGATTCTAGATCAGTATATATTATGTTTGCTCCGGATTCAAACTTGGGCACAAGTAATCCTGAGGTTTTATATGTATGGCTAGGAAGGGGTGTTTCATATGAAAAAGGCCAGAGTCAATTGACTAGCAGTGATGGCACATGCAAGGATAATCATGTCCACTGGGAGATGGTTGGGCACAAATTCCTTGCACAAATGGGTTTGCGGAGTGAAGCCCTCATTCAGATAGTCAGGGAAGGCGAGGAGCCGATGCAGCTCCTGAACCATCTAAACTCTTTCTCATTTCACAAGACAGAAAACAGCAGTCACAGACTTACAGCTGAGAAAAATTAG 2631 0.4489 MLREEDKDRLSGGTGTRRAYLRSVSWTDRSPTKPLPRPQPNSKVRSCLPPLQPLSISRRNAEEWPRAGSDDLGVWPHPPTPGGRLGSIKPLENSNSEQPQREFQFKRDKLAFFDKECSRIADHIYLGSDAVAKNRETLRQNGITHVLNCVGFVCPEYFKSDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSSSLVIAYLMWREGQSFEGAFQYVKAARGVTNPNMGFACQLLQCQKRVHAVPVSPNSVLRMYRMAPHSPYDPLHLVPKMLSHPGTLGLDSRGAFIVHVPSAIYVWIGKNCNMVMSNNARAAAYQVIRYERAQGPIVSIKEGEETSEFWDALAGGQLLADGSNKVGSRDESSLSSEKDKVCPGVGERKVDEYNLDFEIFHKALAGGVVPPFPLSGTGSETCLPARENGWGRLRRKFTSGFMKEFVTKLNCDTIQSSHGADMIIDTCNEVKQPVSISNPLSPSTPPCGSPDSLPCSPNGSSISSIGKDMEHPVPLTDPLLSETPNCGSPDSFSRFLGGSPKFSSKSPSLSPSTSEYSSSFTFSPSSSNWSDLSYLSSQQPSPSSLEPTDPFCVKNGSSAEDPCLLYKGTQTSLEEDFSANHALNGANTCFPCKGTCPSIAERRGSNPPPRMLLPSVDEPPQVPPNLVRSWSFSLPDLDDVMMKDVDCDQFEHEGNGEELMLDGEHFGTGNELESEIEDKKVYGNFYVPLGDTSDRVAEETNLALYQWPTMNKVELYNFGVLDSRSVYIMFAPDSNLGTSNPEVLYVWLGRGVSYEKGQSQLTSSDGTCKDNHVHWEMVGHKFLAQMGLRSEALIQIVREGEEPMQLLNHLNSFSFHKTENSSHRLTAEKN* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0708 876 Pfam Dual specificity phosphatase, catalytic domain 124 254 IPR000340 GO:0008138|GO:0016311
Vvi1g0708 876 SUPERFAMILY Actin depolymerizing proteins 746 869 - -
Vvi1g0708 876 Gene3D Severin 283 365 IPR029006 -
Vvi1g0708 876 SMART VILL_6 268 362 IPR007122 GO:0051015
Vvi1g0708 876 SUPERFAMILY Actin depolymerizing proteins 262 365 - -
Vvi1g0708 876 CDD DSP 117 251 - -
Vvi1g0708 876 ProSitePatterns Tyrosine specific protein phosphatases active site. 200 210 IPR016130 GO:0016311|GO:0016791
Vvi1g0708 876 SMART dsp_5 116 255 IPR020422 GO:0006470|GO:0008138
Vvi1g0708 876 MobiDBLite consensus disorder prediction 18 32 - -
Vvi1g0708 876 PANTHER MKPA PROTEIN 14 856 - -
Vvi1g0708 876 MobiDBLite consensus disorder prediction 1 100 - -
Vvi1g0708 876 Gene3D Protein tyrosine phosphatase superfamily 89 258 IPR029021 -
Vvi1g0708 876 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 175 236 IPR000387 GO:0016311|GO:0016791
Vvi1g0708 876 ProSiteProfiles Dual specificity protein phosphatase domain profile. 116 258 IPR020422 GO:0006470|GO:0008138
Vvi1g0708 876 MobiDBLite consensus disorder prediction 481 529 - -
Vvi1g0708 876 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 108 257 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0708 Vvi-Chr1 7095328 7100092 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0708 27 152 Protein tyrosine phosphatase (PTP) family AT3G55270 58.015 9.87e-41 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0708 - - vvi:100262951 1742.24