Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0705 ATGGAGATGGAATGTGTGACTGAGTTTCCTCATACTCACATGGATCGGCGTCCTCGGAAGAGGCCTAGGTTTGCTTGGGATGCACCTCAACTTCACCCTAAGGCTCAGCCAGGAATATATTGTGGGCAAGAGGTTGGGAATGTGACAAGCCATGGAACATCGAGGGTACTCTCAGACCAGGCTAGTATATTTGTAAAGGGATTGGCTCAAAAAGGCTCTCCCCCATGGCGAGATGATGACAAAGACGGACATTTCATGTTTGCACTGGGAGAGAATTTAACCTCGCGCTATAAGATCCACAGAAAAATTGGTGAAGGTACCTTTGGTCAGGTTTTGGAATGCTGGGATAGGGAAACAAAGGAGATGGTTGCTATAAAAGTTGTTCGAGGTATCAAAAAATATCGTGAGGCAGCAATGATAGAAGTTGAAGTGCTACAGTTGCTTGGAAAATATGATAAAAGTGGCTCTCGTTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATTGTATTTGAGATGCTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCAGTTGATCTAGTCCGCGAGATTGGCAGACAACTGTTGGAATGTGTAGCATTCATGCATGATTTGCACCTCATCCACACTGACTTGAAGCCTGAGAACATACTTTTTGTTTCTCCAGAATATGTAAAAGTATCAGACTACAAGGTTACCACACGGTCACCAAAAGATGGAATATGTTATAAGAAGTTGCCAAGATCAAGTGCTATTAAGGGCTTGGATGGAGTTATCCATGTGACATGTGGAGCGTTGGTTGTATATTGGTGGAACTATGTTCGGGAGAAGCTTTGTTTCAGACACATGAGAACTTGGAGCACCTGGCCATGA 906 0.4327 MEMECVTEFPHTHMDRRPRKRPRFAWDAPQLHPKAQPGIYCGQEVGNVTSHGTSRVLSDQASIFVKGLAQKGSPPWRDDDKDGHFMFALGENLTSRYKIHRKIGEGTFGQVLECWDRETKEMVAIKVVRGIKKYREAAMIEVEVLQLLGKYDKSGSRCGQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRSFPVDLVREIGRQLLECVAFMHDLHLIHTDLKPENILFVSPEYVKVSDYKVTTRSPKDGICYKKLPRSSAIKGLDGVIHVTCGALVVYWWNYVREKLCFRHMRTWSTWP* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0705 301 MobiDBLite consensus disorder prediction 1 20 - -
Vvi1g0705 301 Gene3D Transferase(Phosphotransferase) domain 1 176 264 - -
Vvi1g0705 301 ProSitePatterns Protein kinases ATP-binding region signature. 103 126 IPR017441 GO:0005524
Vvi1g0705 301 Pfam Protein kinase domain 97 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0705 301 ProSiteProfiles Protein kinase domain profile. 97 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0705 301 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 267 - -
Vvi1g0705 301 SUPERFAMILY Protein kinase-like (PK-like) 84 246 IPR011009 -
Vvi1g0705 301 SMART serkin_6 97 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0705 301 Gene3D Phosphorylase Kinase; domain 1 71 175 - -
Vvi1g0705 301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0705 Vvi-Chr1 7066266 7069455 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0705 83 232 EF-hand Containing Proteins AT5G22840 33.121 1.10e-21 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vvi1g0705 Pkinase 3.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0705 K08287 - vvi:100268099 554.673