Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0672 ATGAAGGAGGTGGACCCAATTATCCCGGCTTTATTCCTTTATAATCCCACTCCCTTCTCTCAACTTTCTCACTACTTTTTCTTCTCTTCTCTGTTTTTCTTATTTTCAAGACGGGAGAAAGCTATGGCAATTCCTCTCTCTGTTCTTCTCTTCCTCCTGCCTCTTCTGTCTCCAACCTTCATTTCCTCTTCGCCGGTTCAAGATCCTGAGCTAGTAGTAGAAGAAGTGCACAAGAGGATCAATGCTTCAAGGAGGAACTTGGGGTTCCTGTCTTGCGGAACCGGCAACCCCATCGACGACTGCTGGCGGTGCGACCCAGATTGGGAAAAGAACCGCCAGGGTTTGGCTGACTGCTCAATCGGGTTTGGGAGGCATGCCATAGGCGGAAGAGATGGGGAGATTTACGTGGTGACAGACTCAGGGGACTATGACCCTGTGAACCCTAAGCCTGGCACTCTGAGATATGCAGTGATCCAAAAGGAGCCATTGTGGATCATTTTCCAGAGGGATATGGTGATCAAACTGAAGGAAGAGCTGATCATGAACTCGTTCAAGACCATCGACGGAAGAGGCGCCAGCGTCCACATTGCGGGAGGGCCGTGCATTACTATCCAGTACGTGACCAACATTATCATTCATGGCCTCAACATACACGACTGCAAGCAAGGAGGAAACGCCAATGTGAGGGACTCCCCCGACCATTACGGGTGGAGGACGATATCAGACGGGGATGGGGTGTCCATATTCGGGGGAAGCCATGTTTGGGTGGACCACTGCTCTCTCTCCAACTGCAATGACGGACTGGTGGATGCCATCCATGGATCCACGGCCATCACCATCTCCAACAACTACATGACCCATCATAACAAGGTCATGCTATTGGGCCACAGTGATTCCTATACTCAAGACAAGAACATGCAGGTTACCATTGCCTTCAACCATTTTGGAGAAGGTCTCGTCCAGAGAATGCCCAGATGTCGACACGGCTATTTTCATGTGGTGAATAACGACTACTCGCACTGGGAAATGTACGCTATTGGGGGAAGCGCGGAGCCTACAATTAACAGCCAAGGCAATAGATTTCTTGCTCCTGATGACAGATTCAGCAAGGAGGTAACCAAACATGAGGATGCACCACAGAGCCAATGGAAGAATTGGAATTGGAGATCAGAAGGAGATTTATTGTTAAATGGTGCCTTCTTCACAGCATCAGGGGCCGGAGCTTCTTCTAGTTACGCCAAGGCTTCGAGTTTGGGGGCAAGACCCTCATCTCTTATCACCACTATCACAAATGGGGCTGGTGCACTCAACTGCAAGAAAGGCAAGCGTTGCTGA 1335 0.4981 MKEVDPIIPALFLYNPTPFSQLSHYFFFSSLFFLFSRREKAMAIPLSVLLFLLPLLSPTFISSSPVQDPELVVEEVHKRINASRRNLGFLSCGTGNPIDDCWRCDPDWEKNRQGLADCSIGFGRHAIGGRDGEIYVVTDSGDYDPVNPKPGTLRYAVIQKEPLWIIFQRDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNANVRDSPDHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLVDAIHGSTAITISNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYSHWEMYAIGGSAEPTINSQGNRFLAPDDRFSKEVTKHEDAPQSQWKNWNWRSEGDLLLNGAFFTASGAGASSSYAKASSLGARPSSLITTITNGAGALNCKKGKRC* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0672 444 Coils Coil 442 444 - -
Vvi1g0672 444 Gene3D - 95 437 IPR012334 -
Vvi1g0672 444 SUPERFAMILY Pectin lyase-like 79 438 IPR011050 -
Vvi1g0672 444 PANTHER PECTATE LYASE 18-RELATED 67 442 IPR045032 GO:0030570
Vvi1g0672 444 FunFam Pectate lyase 95 437 - -
Vvi1g0672 444 SMART amb_all 170 367 IPR002022 -
Vvi1g0672 444 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Vvi1g0672 444 PRINTS Pollen allergen Amb family signature 344 363 IPR018082 -
Vvi1g0672 444 PRINTS Pollen allergen Amb family signature 242 263 IPR018082 -
Vvi1g0672 444 PRINTS Pollen allergen Amb family signature 142 167 IPR018082 -
Vvi1g0672 444 PRINTS Pollen allergen Amb family signature 178 194 IPR018082 -
Vvi1g0672 444 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Vvi1g0672 444 PRINTS Pollen allergen Amb family signature 118 135 IPR018082 -
Vvi1g0672 444 PRINTS Pollen allergen Amb family signature 415 438 IPR018082 -
Vvi1g0672 444 Pfam Pectate lyase 177 361 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0672 Vvi-Chr1 6744449 6746161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0672 48 444 Polysaccharide Lyase AT5G63180 81.796 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0672 K01728 - vvi:100242302 807.364