Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0670 ATGTCGACTTTCTTTGCATTTCACACTTCTCCGCTCCACCTCTCTCCCTTCCCTCACCGGACCCAAATTCGGACCCCTATTCTTCATCCCTCTCACTTTCCGGGGTTACCTAATCGCCGCTCACTCGGTGTGGCCAGGTTCGGATTCAGGCCTTTCCATTCCGATGGTGCTGACGCTGTTATTGGGGACCTCTTTGGTAGAGTGGAAACCCTTCTTTATACGATTGCCGATGCCGCCGTGTCGGCTAGTGACGGTAAACAGAGCGGCGACTGGCTTTCTGGGATTACTAATTATATGGAGACTGTTTTGAAGGTTTTGAAGGGTGGCCTTTCTACTTTACATGTTCCCTATGCCTATGGTTTTGCTATTATACTTCTCACTGTTCTTGTTAAGGCTGCCACATTTCCTCTGACAAAGAAGCAGGTAGAATCTGCAATGGCTATGCGATCTTTGCAGCCTCAAATAAAGGCTATTCAGCAACGATATGCCGGAGATCAGGAGAGAATTCAACTTGAAACTGCTCGACTGTATAAACTAGCTGGCATAAACCCATTAGCAGGATGCCTGCCAACACTGGCCACAATACCAGTATGGATTGGCCTTTATAGAGCCCTTTCCAATGTGGCAGATGAGGGACTTCTAACAGAAGGCTTCTTTTGGATACCCTCCCTTTCTGGTCCAACTACGATTGCTGCTCGGCAAAATGGCAGTGGTATCTCTTGGCTTTTCCCTTTTGTAGATGGTCATCCACCCCTTGGATGGTCGGATACCTTGGCCTATCTTGTCTTGCCTATGTTGCTGATTGTTTCACAGTACATATCTGTCCAAATCATGCAATCATCACAGAGTAATGATCCAAGCCTGAAGACTTCTCAAGCACTGACCAAGTTTCTCCCCTTAATGATCGGCTATTTTGCCCTTTCAGTTCCATCTGGGTTAAGCCTTTATTGGTTCACAAATAATATCTTGAGCACAGCGCAACAAGTATGGCTTCAAAAGTTAGGAGGTGCACAAATTCCAGTGAAGCAGTTCAGTGATGATATTGAAAAGGAGGAGCTATCCCAGATTCAGAAACCTGTTTTTGAAATAAACTCAACCAAAAAGGAGCCCAAACAAACAGAAAAGTTAACATCAGAGGGGCTACGGCCTGGTGAAAGATTTAAACAGATTAAGGAGCAAGAGGCAAGGAGAAGGCAGCAAAGGGAAGAAGAAAAGACGAAAGCTGAAGAGGCAGCAGCTAATAGAATACCAACAACAAATGGAGGCTATAAGAATGAGGCTAATTCAACTAAAAGGGAATATAGGACTGGAGGTGATTTAGTTGATGGTGGGAATGACAGTTTTCAGTCCTTAACTACCACTCACAATTCATCCAATATTGAGGTAGTGGTAAATGATGAGCTTTCTAATGAGGACTCAAAAGATGAACAGAAGATGTATGTCACCAGGACAGAAAGCAGTGAAAACTCTGTTAATTATGAGGTAGATGTGAGGGATGAGCAGCATATTAATGGAAAGCTAGAAAAGGAAGTGATTGAAGTATGTACGGATAACAAACCTTCTGGGGAAGAGACATTGCAACCGAGAAGAGAGCAACCCACTGAAAGGGAAGAAGTATAG 1620 0.4432 MSTFFAFHTSPLHLSPFPHRTQIRTPILHPSHFPGLPNRRSLGVARFGFRPFHSDGADAVIGDLFGRVETLLYTIADAAVSASDGKQSGDWLSGITNYMETVLKVLKGGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQIKAIQQRYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLSGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTLAYLVLPMLLIVSQYISVQIMQSSQSNDPSLKTSQALTKFLPLMIGYFALSVPSGLSLYWFTNNILSTAQQVWLQKLGGAQIPVKQFSDDIEKEELSQIQKPVFEINSTKKEPKQTEKLTSEGLRPGERFKQIKEQEARRRQQREEEKTKAEEAAANRIPTTNGGYKNEANSTKREYRTGGDLVDGGNDSFQSLTTTHNSSNIEVVVNDELSNEDSKDEQKMYVTRTESSENSVNYEVDVRDEQHINGKLEKEVIEVCTDNKPSGEETLQPRREQPTEREEV* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0670 539 MobiDBLite consensus disorder prediction 467 482 - -
Vvi1g0670 539 PANTHER OXA1 77 398 IPR001708 GO:0016020|GO:0032977
Vvi1g0670 539 MobiDBLite consensus disorder prediction 515 539 - -
Vvi1g0670 539 MobiDBLite consensus disorder prediction 363 492 - -
Vvi1g0670 539 Pfam 60Kd inner membrane protein 119 333 IPR028055 -
Vvi1g0670 539 MobiDBLite consensus disorder prediction 443 466 - -
Vvi1g0670 539 CDD 5TM_YidC_Alb3 120 333 IPR047196 -
Vvi1g0670 539 NCBIfam membrane protein insertase YidC 119 333 IPR028055 -
Vvi1g0670 539 Coils Coil 390 411 - -
Vvi1g0670 539 MobiDBLite consensus disorder prediction 364 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0670 Vvi-Chr1 6701748 6712377 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0670 51 405 Chloroplast and Mitochondria Gene Families AT2G28800 54.945 6.84e-132 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0670 K03217 - vvi:100256113 1018.07