Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0660 ATGTTCATTGGGGATAGAGTGAAACTTGTCTGCGATGCCTTTCAACTTGATAAAGAGGAATCTCCTTGCATCATTTTTAAAGATGAAATTGACGCCATAGACAGAAAGCGGTTTTATAGTGAAGTGGGTGGTGACATGGAGTTTGAATATGTCGATTCATCAAATATGTCTCCTCCTAAAGTGCCAGAAGTACAACTTTCTGTTGCCATAGGTTCTGGACCAGATAATTCTGCACATGATGCACCATCTAAGCTATCACCATGGGCCAAAAATTTGAAAATTCCTCAGTCATTGGCAGGGGAACAAAACGAATCTCCAATTGGAACTACTGCTAAATCAAGCTTTGCACGTTTCATTAGTGGGATTGGATCACGCTTGTCTCCAAAAACTCCTACATCTGAAGATGGTCCTGATGGATCTTCAACAACGGCACAACCTAGTTTATTTGGAATGTTTACAAAAGGAATAGTTGACTCATCTAAGAATGCAGTGAAGGTTGTGCAAGTCAAGGCTCGTCATGTGGTCTCTCAAAATAAACGAAGATATCAGGAGGAGGGATTTGGCTTGGATATGACATACATCACAGAGAATATAATTGTTATGGTTCTCCCCAACTGA 618 0.4045 MFIGDRVKLVCDAFQLDKEESPCIIFKDEIDAIDRKRFYSEVGGDMEFEYVDSSNMSPPKVPEVQLSVAIGSGPDNSAHDAPSKLSPWAKNLKIPQSLAGEQNESPIGTTAKSSFARFISGIGSRLSPKTPTSEDGPDGSSTTAQPSLFGMFTKGIVDSSKNAVKVVQVKARHVVSQNKRRYQEEGFGLDMTYITENIIVMVLPN* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0660 205 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 157 204 - -
Vvi1g0660 205 MobiDBLite consensus disorder prediction 125 145 - -
Vvi1g0660 205 MobiDBLite consensus disorder prediction 122 145 - -
Vvi1g0660 205 Gene3D Protein tyrosine phosphatase superfamily 165 205 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0660 Vvi-Chr1 6633833 6634450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0660 68 204 Protein tyrosine phosphatase (PTP) family AT3G19420 57.343 1.59e-45 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0660 K01110 - vvi:104879555 403.675