Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0655 ATGGGGAGCTGCGGTAGGAATGGAGCCGTAAGGCAGTATATCAGATCAAAGGTGCCGCGTTTGAGGTGGACTCCTGAGCTTCATCACTGTTTTGTTCATGCCATTGAGAGGCTTGGAGGTCAAGACAAGGCTACTCCTAAGCTGGTGCTTCAGTTAATGGATGTGAGAGGACTCACCATTTCACATGTGAAGAGTCATCTCCAGATGTATAGAAGTATGAAGAGTGATATTGGCAGACAAGATAGGAGTTCCACCCAACAAAGAAAGCAATCTTTTGAGGATCATGATGGGTGTGTGGATGAAGAAACTGGCGATGTTGGTTTTCACCCACCTTTAAAATCCATTGAAGAATCGGATTCTCAGTTTATCTACAGTCCACTCCGTGCCAAAAGAGCTCGAATCGAGACGATGAGTTCCATCTCAGAGAACCTGCAATGCAGCCAAAGAATATGTGAGACAGTCGCAACTCCGTACAGTTTTGATGATTATCTGGCTGAGAAAAGGGGAATAAAGGAGGGTGGTGGTTTCAGGTGGCAGACCCAGGCTCCCTCCCCAGCCTTCCCTCTGCCCCACGATCTTTACAACCTCAATCCTTTCGGATATGCTGCGGAAGAATCTGATTTCCTCAAGATTGCCAAGCTAGAAGATCAAAAGCATGCTGTAGCCCAAATGAATAAAAATGAGGATAACGAAAGGAGACCGGCGGATGGTGAGGAAGCTGGTGGCTGTGGGTTATCGTTGTCGCTCTCGTTGCATCATCCCTCCACGCAGAGAAGTAATGCTTCTTCGACGAGCGAGATCAGTGAGGCATTCTCATCATACCCTAGGTCTAACTTCAAAGACAGCTTTGGATCTTATTCAGAAGAACGCAGTATTAATTTAGACCTATCCATAGCTCTCTGTGGCATTTAA 912 0.4649 MGSCGRNGAVRQYIRSKVPRLRWTPELHHCFVHAIERLGGQDKATPKLVLQLMDVRGLTISHVKSHLQMYRSMKSDIGRQDRSSTQQRKQSFEDHDGCVDEETGDVGFHPPLKSIEESDSQFIYSPLRAKRARIETMSSISENLQCSQRICETVATPYSFDDYLAEKRGIKEGGGFRWQTQAPSPAFPLPHDLYNLNPFGYAAEESDFLKIAKLEDQKHAVAQMNKNEDNERRPADGEEAGGCGLSLSLSLHHPSTQRSNASSTSEISEAFSSYPRSNFKDSFGSYSEERSINLDLSIALCGI* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0655 303 SUPERFAMILY Homeodomain-like 17 74 IPR009057 -
Vvi1g0655 303 MobiDBLite consensus disorder prediction 75 100 - -
Vvi1g0655 303 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 73 IPR006447 GO:0003677
Vvi1g0655 303 FunFam Myb family transcription factor 17 75 - -
Vvi1g0655 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 6 103 IPR046955 GO:0003700
Vvi1g0655 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Vvi1g0655 303 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Vvi1g0655 303 Coils Coil 211 231 - -
Vvi1g0655 303 Gene3D - 18 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0655 Vvi-Chr1 6602502 6605760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0655 1 71 G2-like Transcription Factor Family AT1G14600 73.684 3.42e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi1g0655 Myb_DNA-binding 5.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0655 - - vvi:100262842 590.112