Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0618 ATGGAGAGAGTGGTTTACGGTGAGTGCCGGAGAAACCATGCAGCGCAATTGGGATCTCACTCCACTGATGGCTGTGGTGAGTTCTACCCCAGTAATCCTCCGGAGGCTCCCACTCGCTGCGCTGCCTGCGGCTGCCACCGCAACTTCCACCGCCGTCACACCATCATTCACCTAGATGATGAACCCGGAAAGGGCGCCCACAGCGCCGGAAATGGAGGTTGCGGTGTGAAAAAAAGTCATGGAGTAAAGAGCCATAGAAGGCGGATGAAGGAATTCATAGATTTGGAAGAGAGTAAGGAGGAGGCGCAGGTGAAACCCAGGGGCAGAGGTAAGAAGCCTCGGACAATGTTCACGGCCAAACAGAAGGAGATGATGAGAGCATTTGCGGAGAGTTTGGGGTGGACCATGACCAACAAAGAAACCGAGGCGGAGGTGAAAAAGTTCTGCGAAGAAGTGGGAGTGACTAGGTATATCTTCAGGACTTGGCTGAACAACAACAAGAAAATATATGGCGCTGCTGGATCGTCATCTAGTCGCCATTAG 543 0.5267 MERVVYGECRRNHAAQLGSHSTDGCGEFYPSNPPEAPTRCAACGCHRNFHRRHTIIHLDDEPGKGAHSAGNGGCGVKKSHGVKSHRRRMKEFIDLEESKEEAQVKPRGRGKKPRTMFTAKQKEMMRAFAESLGWTMTNKETEAEVKKFCEEVGVTRYIFRTWLNNNKKIYGAAGSSSSRH* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0618 180 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 168 - -
Vvi1g0618 180 Gene3D - 95 173 - -
Vvi1g0618 180 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 6 53 IPR006456 -
Vvi1g0618 180 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 6 53 IPR006456 -
Vvi1g0618 180 NCBIfam homeobox domain, ZF-HD class 111 168 IPR006455 -
Vvi1g0618 180 MobiDBLite consensus disorder prediction 60 85 - -
Vvi1g0618 180 Pfam ZF-HD protein dimerisation region 4 54 IPR006456 -
Vvi1g0618 180 SUPERFAMILY Homeodomain-like 104 167 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0618 Vvi-Chr1 6167005 6167547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0618 4 167 ZF-HD Transcription Factor Family AT1G69600 39.037 7.58e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vvi1g0618 ZF-HD_dimer 2.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0618 - - vvi:100254345 384.03