LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g0559	ATGTCTGTCTCCTCCGCCCTCAACGCGTTCAAGTCCTCAGCGCTCATATCATGGAAATCTCTTGGGAAGCTCCAGCAAACCATAGCGGGGTGTATTGAGAGGTCTGGCATCACTTTACACTCCGGCAGGGTTGCCAGGGTGAAGATATGGCCGGAGTGTGCTGGAGTTGGGAGATACTTCGACTTTCGATCCAATTTTATTCACCCTTCAGTCGATTACGTTCAGGAATCGCCTCTCTGCACCACGCTCTGCAAAGACGGCTACAAGGTTCGAACTGTCGAGCACTTGCTTTCGGCTTTGGAGGCAATGGGCGTCGATAATTGCAGAATCGAGGTGGAAGGTTTGAACGGAGAAGAGTCAAGTGTGGAGGTTCCTATTTTTGATGGGTCAGCAAAGGAATGGGTGGAAGCAATAGAGCAGGTTGGATTAAAGGTGGCAACAGATCAGGGTGGCAACAGTTGTGAGAAAATGATACCGTTTCTTATTGAACCTGTGCATGTGCATAGGAATGATTCTTTTATAGCAGCTTTCCCCTATCCCAAAGTTCAGATCATTTATGGAATTGATTTTCCACAGGTGCCTGCTATTGGTTGCCAGTGGTTCTCTTCAGCCTCTTTGGATGACTCTTTCTACACCAGTGAAATAGGTCCTTCAAGAACCTTTTGTGTTTATGAAGAGGTGGAGAAACTACGTAACTTGGGACTCATTAAAGGTGGCTCAACAGATAGTGCCATTGTTTGTAGTGCCAGTAAAGGTTGGCTGAATCCACCACTGCGTTTCCCTGACGAACCTTGTCGCCATAAGGTTTTAGATCTTATTGGTGACCTTTCCCTTTTTGCACGGCATGGTAGTCAAGGGTTTCCAGTGGCACAGATAGTTGGTTACAAGGGAGGCCATGCACTGCATGCAGATTTTGTACGGCGTCTGTCAGGAATCAGTTAA	942	0.4724	MSVSSALNAFKSSALISWKSLGKLQQTIAGCIERSGITLHSGRVARVKIWPECAGVGRYFDFRSNFIHPSVDYVQESPLCTTLCKDGYKVRTVEHLLSALEAMGVDNCRIEVEGLNGEESSVEVPIFDGSAKEWVEAIEQVGLKVATDQGGNSCEKMIPFLIEPVHVHRNDSFIAAFPYPKVQIIYGIDFPQVPAIGCQWFSSASLDDSFYTSEIGPSRTFCVYEEVEKLRNLGLIKGGSTDSAIVCSASKGWLNPPLRFPDEPCRHKVLDLIGDLSLFARHGSQGFPVAQIVGYKGGHALHADFVRRLSGIS*	314

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g0559	313	SUPERFAMILY	Ribosomal protein S5 domain 2-like	163	309	IPR020568	-
	Vvi1g0559	313	SUPERFAMILY	Ribosomal protein S5 domain 2-like	24	144	IPR020568	-
	Vvi1g0559	313	Gene3D	lpxc deacetylase, domain 2	161	312	IPR011334	GO:0008759\|GO:0009245
	Vvi1g0559	313	NCBIfam	UDP-3-O-acyl-N-acetylglucosamine deacetylase	25	308	IPR004463	GO:0008759\|GO:0009245
	Vvi1g0559	313	Gene3D	lpxc deacetylase, domain 1	23	149	IPR015870	GO:0008759\|GO:0009245
	Vvi1g0559	313	PANTHER	UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED	4	311	IPR004463	GO:0008759\|GO:0009245
	Vvi1g0559	313	Pfam	UDP-3-O-acyl N-acetylglycosamine deacetylase	25	309	IPR004463	GO:0008759\|GO:0009245
	Vvi1g0559	313	Hamap	UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC].	23	313	IPR004463	GO:0008759\|GO:0009245

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g0559	12	310	Carbohydrate Esterase	AT1G25054	61.204	1.26e-136	388

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi1g0559	K02535		-	vvi:100266270	640.573

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