Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0524 ATGAGCGACTCATTAGGCGCAGCCGCATTCATGATGAAACCCAAGAACTTCTTGCAGAATATAATGAAGCCCTTCAAATTCAGTTCCAGCAAAGAGGGACAGAAAGAGGAGGATTTGGAGAAGATCGCCGCCCAGGAACAGAAGCTATTCCCTTTCGAAACCCTAGTCGCAGCCACCAAAAATTTCCACCAGAAGCTCGGTGAAGGAGGTTTCGGTCCCGTCTTCAAGGGGAGGTTGGAGGATGGAAGAGAGATTGCTGTAAAGAAGCTGTCACAGAACTCGAATCAAGGGAAGAAAGAGTTTGAGAATGAGGCCAAGTTGTTGGCTCGTGTACAGCATCGAAATGTTGTAAATCTGTTAGGATATTGTACACGTGGTGCAGAGAAACTTCTTGTCTATGAGTACATCTCCAATGAAAGCCTTGACAAGTTTCTCTTCAAAACAGGTAGACGAGAGGAACTGGATTGGAAACGAAGGTATGACATAGTTGGAGGCATCGCACGGGGCTTGCTTTACCTTCATGAAGACTCCCATAGTTGCATAATCCATCGGGACATCAAGGCCAGCAATGTTCTACTAGATGATAAATGGGCCCCAAAAATTGCCGATTTTGGTATGGCACGTCTCTTTCCAGAAGACCAAACTCATGTCAACACCCGTGTAGCTGGCACCAATGGGTACATGGCTCCTGAGTATGTCATGCACGGACATCTTTCAGTGAAGGCAGACGTATTCAGTTTTGGGGTTTTGATTTTAGAGCTGATCAGTGGTCAGAAGAACTCCACATTTGATGTAAATCTTGATGCACAGAACCTACTTGAGTGGGCATGGAAACTTTACAAGAAAGGCCGAAGCTTGGAGGTTTTGGATCCCTCATTAGCATCATCTGCAGTTGCTGAGCAAGTAGCGATGTGTGTACAGATTGGTCTGCTGTGCACTCAAGCTGATCCACAGTCACGGCCCAACATGCGCCGTGTCGTGGTTATGCTATCAAAGAAACCAGGCACCCTGGAGGAGCCAACTAGACCTGGATACCCAGGTTCAAGATACAGAAGATCTCGTCGGCCTACAACATCAGCCTCCACAGCTGGAACTTCGGGTGAATCTTCACACACATTTGAATCTACCACAAATAGCGCCACTGCAACCACGTCAGGGGTGGCTAGCCCAAGATTAGACTCAAGAGGGAAACGTCCTGTGCAAGGTTAA 1209 0.4731 MSDSLGAAAFMMKPKNFLQNIMKPFKFSSSKEGQKEEDLEKIAAQEQKLFPFETLVAATKNFHQKLGEGGFGPVFKGRLEDGREIAVKKLSQNSNQGKKEFENEAKLLARVQHRNVVNLLGYCTRGAEKLLVYEYISNESLDKFLFKTGRREELDWKRRYDIVGGIARGLLYLHEDSHSCIIHRDIKASNVLLDDKWAPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSVKADVFSFGVLILELISGQKNSTFDVNLDAQNLLEWAWKLYKKGRSLEVLDPSLASSAVAEQVAMCVQIGLLCTQADPQSRPNMRRVVVMLSKKPGTLEEPTRPGYPGSRYRRSRRPTTSASTAGTSGESSHTFESTTNSATATTSGVASPRLDSRGKRPVQG* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0524 402 CDD STKc_IRAK 66 332 - -
Vvi1g0524 402 Pfam Protein tyrosine and serine/threonine kinase 62 329 IPR001245 GO:0004672|GO:0006468
Vvi1g0524 402 FunFam Cysteine-rich receptor-like protein kinase 10 26 135 - -
Vvi1g0524 402 Gene3D Phosphorylase Kinase; domain 1 24 135 - -
Vvi1g0524 402 MobiDBLite consensus disorder prediction 352 390 - -
Vvi1g0524 402 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 33 379 - -
Vvi1g0524 402 Gene3D Transferase(Phosphotransferase) domain 1 136 339 - -
Vvi1g0524 402 SUPERFAMILY Protein kinase-like (PK-like) 47 351 IPR011009 -
Vvi1g0524 402 MobiDBLite consensus disorder prediction 330 402 - -
Vvi1g0524 402 SMART serkin_6 60 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0524 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Vvi1g0524 402 ProSiteProfiles Protein kinase domain profile. 60 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0524 402 FunFam Cysteine-rich receptor-like protein kinase 10 137 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0524 Vvi-Chr1 4966182 4973713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0524 40 345 Receptor kinase-like Gene Family AT4G11530 51.613 2.92e-115 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi1g0524 PK_Tyr_Ser-Thr 3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0524 - - vvi:100249212 743.806