Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0490 ATGTCTGATTCCTTCCATGGTCGGAAACTTCGGCCTCTCGTTCCAAGGCCTAATGCTTCTGTCCTCCCCAAGATTACAGTGAATTCTACAGTGGCAATCTCTCCTTGTATTAGTCACCTTCATGGCACTGATCTTTTTGCATTGAATCACCATCTGGGTGGTACATCTGATCAGCAAAGAAAGACAGATTTCAACACACAACCCTTCGGGAGCTCAAGGTGGAATCCAACACCAGAGCAGCTACAAGCCCTGGAGGAGCTGTATCGACGAGGAACGCGAACACCCACTGCTGAACAAATCCAACAAATTGCTGCACAACTTCGTCTGTTCGGCAAGATTGAAGGGAAGAATGTGTTTTACTGGTTTCAAAATCATAAAGCGCGAGAACGCCAGAAACGCCGTAGAGAGTTGGAGTCAGATTCTGAAGAACAACAGCGTGATAATGGTAGCCTAGAAAGGAAAGAATCAGTGCTGAGAAGGACATGTATTGAAGTTGAACAGACAAAGAACTGGGTGGTGCCCTCTTCAAACTGCAGTACACTCTCTGAGGAATCTGTTTCAATACAGAGAGCAGCGGTTGCAGAAAGTAGAACAGATGTGTGGTTTCAATTTGAGGAGAGAGAATTACAGCAGACAAGAAGCACAGTAGAAAGGCAGGCCACATGGCAGTTGATGGGGCTCACCTCTTCTCCTCCTTCCCAACTTATAGACACCATAACCACAACCACCGTAGCCGAAGCATTGAATACAATATACCCAAAGCAGAAGCCATTAAGCCCTCAAAGTCTCAGACCCAACACCCACCTCGAACATGAAACCAGGGAGTCTCAAACCCTTCAACTCTTCCCAGTTCAGGGGGGCCAGAGCTTCAATGCTGCTAATGAAATCATTAGCGTGGCTGAGATGGAGAATGGATTACCCATCACAACCATAGACACCAACTTCACTCCAAACCAGTTTTTTGAGTTCCTCTGA 975 0.4656 MSDSFHGRKLRPLVPRPNASVLPKITVNSTVAISPCISHLHGTDLFALNHHLGGTSDQQRKTDFNTQPFGSSRWNPTPEQLQALEELYRRGTRTPTAEQIQQIAAQLRLFGKIEGKNVFYWFQNHKARERQKRRRELESDSEEQQRDNGSLERKESVLRRTCIEVEQTKNWVVPSSNCSTLSEESVSIQRAAVAESRTDVWFQFEERELQQTRSTVERQATWQLMGLTSSPPSQLIDTITTTTVAEALNTIYPKQKPLSPQSLRPNTHLEHETRESQTLQLFPVQGGQSFNAANEIISVAEMENGLPITTIDTNFTPNQFFEFL* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0490 324 FunFam WUSCHEL-related homeobox 4 71 138 - -
Vvi1g0490 324 MobiDBLite consensus disorder prediction 131 153 - -
Vvi1g0490 324 SMART HOX_1 69 136 IPR001356 GO:0003677
Vvi1g0490 324 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 57 323 IPR044555 GO:0003700|GO:0099402
Vvi1g0490 324 Pfam Homeodomain 72 131 IPR001356 GO:0003677
Vvi1g0490 324 CDD homeodomain 73 133 IPR001356 GO:0003677
Vvi1g0490 324 ProSiteProfiles 'Homeobox' domain profile. 77 132 IPR001356 GO:0003677
Vvi1g0490 324 MobiDBLite consensus disorder prediction 255 276 - -
Vvi1g0490 324 Gene3D - 66 132 - -
Vvi1g0490 324 SUPERFAMILY Homeodomain-like 68 136 IPR009057 -
Vvi1g0490 324 Coils Coil 127 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0490 Vvi-Chr1 4685930 4687592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0490 2 233 Wox Gene Family AT3G18010 42.041 2.69e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vvi1g0490 Homeodomain 9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0490 - - vvi:100250994 651.358