Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0411 ATGATGTGGGCCATTGCAGGCCAATGGCTGAAGGGCGGTTCTGTTAGTAACTTTCTTTCTCCCCCCCTCTCTCTCTCTGCGGAACAAGAGAAGAAGCTCTCTCCCCTTTTTGACACCTGGTTCAGCAAGAACCCGACGCAAATGCAGAAAGACATTTCCATCTCTCCTGGCGGCATTAAATTCTTCTCATCACCGGCTGGTAACCGGTCGGACGGCCTCGGTTTCCCTTCTCTCTACTCTTCCATTTTCTCGCCAAAACCATCCCTCTCAAACTCCGTCTCACTCACACCGTCCGAGTACTCTACCGATGAGGATGTCAACAACAATAGTAACAACAACAGCACCCCAACCTCCATAGATAACGTTCAAGCACTCGAAGTCCCATATTCTCCGCCGTCTCGCCTCATATACGAGCACCAAGACCTCATCAACCGCCATAACTTGTGCCTCAATCACCTCCGTGAAACCGCTCAAGAAGCCGAAGTACTTCGTCACGAGAACTCGAATCTCCGCATCGCCAACAGAGATCTCAACAAGCGATTGAGTCTCCTGATCCAAAATTCTATTCAGAACCGATTCGTCAACTCTGAGTATTCTTCCTCGAGGTCAATGGCTGATGAATTTCGCCGTCTCGGTCTTGGAGATGGTAACGAGACTCGTAGTTGGGATGATGAAATATCTAATGAGAGTCCAACGAGTGTGATCGAGAGTGACCGGGTCGAGAGGATTGACGTGGAACGAATTACGCTGCCAAAGAGCATCTCCGTGAGGTCGAATGGGTACTTGAAGATGAGTCAACCCGGAACGAGTGAAGGTGGTCGGACTCGGATCCCGAATCGGCTTCGAACTACGAGCCCACTCAATGGAACGCAAAAGGTTTACGTGCGTGGAGTCAAGAAAGAGGAGGAACCAGTGGAACTGGAGGTGTACAACCAAGGCATGTTCAAGACTGAGTTGTGTAATAAGTGGCAGGAGAGCGGCACTTGCCCGTATGGCGATCACTGCCAGTTTGCTCATGGCATCGAGGAACTCCGCCCGGTCATACGCCACCCACGCTACAAGACTGAAGTCTGCCGCATGGTCCTCGCTGGTGATGCCTGCCCATATGGTCACCGCTGCCACTTTCGCCATGCCTTAACTGAGCAGGAAAGGTTCATGGGACAACTCCAGCCAAGGGCAATCAAGCTGGACAGATAA 1197 0.5146 MMWAIAGQWLKGGSVSNFLSPPLSLSAEQEKKLSPLFDTWFSKNPTQMQKDISISPGGIKFFSSPAGNRSDGLGFPSLYSSIFSPKPSLSNSVSLTPSEYSTDEDVNNNSNNNSTPTSIDNVQALEVPYSPPSRLIYEHQDLINRHNLCLNHLRETAQEAEVLRHENSNLRIANRDLNKRLSLLIQNSIQNRFVNSEYSSSRSMADEFRRLGLGDGNETRSWDDEISNESPTSVIESDRVERIDVERITLPKSISVRSNGYLKMSQPGTSEGGRTRIPNRLRTTSPLNGTQKVYVRGVKKEEEPVELEVYNQGMFKTELCNKWQESGTCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDACPYGHRCHFRHALTEQERFMGQLQPRAIKLDR* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0411 398 SMART c3hfinal6 352 379 IPR000571 GO:0046872
Vvi1g0411 398 SMART c3hfinal6 314 341 IPR000571 GO:0046872
Vvi1g0411 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 315 340 IPR000571 GO:0046872
Vvi1g0411 398 SUPERFAMILY CCCH zinc finger 348 383 IPR036855 GO:0046872
Vvi1g0411 398 PANTHER CCCH ZINC FINGER/TIS11-RELATED 138 384 IPR045877 GO:0003729
Vvi1g0411 398 FunFam Zinc finger protein 36, C3H1 type-like 1 348 384 - -
Vvi1g0411 398 FunFam zinc finger CCCH domain-containing protein 15-like 308 347 - -
Vvi1g0411 398 ProSiteProfiles Zinc finger C3H1-type profile. 314 342 IPR000571 GO:0046872
Vvi1g0411 398 Gene3D - 308 347 - -
Vvi1g0411 398 Gene3D - 348 384 - -
Vvi1g0411 398 MobiDBLite consensus disorder prediction 86 118 - -
Vvi1g0411 398 SUPERFAMILY CCCH zinc finger 311 346 IPR036855 GO:0046872
Vvi1g0411 398 Coils Coil 153 180 - -
Vvi1g0411 398 ProSiteProfiles Zinc finger C3H1-type profile. 352 380 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0411 Vvi-Chr1 3858749 3861770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0411 129 387 C3H Transcription Factor Family AT1G68200 52.222 5.38e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi1g0411 zf-CCCH 1.6e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0411 K18753 - vvi:100242335 702.59