Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0410 ATGAATTTCTCCTGTGGTGATCGCTTGGTTGCTTCGGTGGTTTCATCTGTTTGTGTCACTATGTCAGCTCATGTGGACAAAGACACAGATCCTTCTGACCAAGCTCATCACTTCTCCACAAGCGTGAATTCTCACTGCCCAATTCGACCATCCTTTTCGGCTATGTCATTCTCTGTTTCAATACTCAGTCCAGAAAGCAGTAGTACTGATTATCTCGATAGTGGACTTTCACCTACGACAACACGAGGGCCTCCATTTGATTCATCTGATCTGGAGAGTGCACATTCAGAAGCCAGAGAAAATGCCATGATGAGATACAAAGAGAAGAAGAAGGTCCGAATGAATGAAAAGCAAATCCGACATACACCTCGGAAAGCTGATCCAAGAAAGCGGGTAAAAGGTCAATCACTAAAAGCAGAAGGCTACGAATCTGACAGTGTCAATGCGACACCAAGTTATTGA 462 0.4416 MNFSCGDRLVASVVSSVCVTMSAHVDKDTDPSDQAHHFSTSVNSHCPIRPSFSAMSFSVSILSPESSSTDYLDSGLSPTTTRGPPFDSSDLESAHSEARENAMMRYKEKKKVRMNEKQIRHTPRKADPRKRVKGQSLKAEGYESDSVNATPSY* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0410 153 ProSiteProfiles CCT domain profile. 99 139 IPR010402 GO:0005515
Vvi1g0410 153 MobiDBLite consensus disorder prediction 64 87 - -
Vvi1g0410 153 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 27 139 - -
Vvi1g0410 153 MobiDBLite consensus disorder prediction 92 138 - -
Vvi1g0410 153 MobiDBLite consensus disorder prediction 64 153 - -
Vvi1g0410 153 Pfam CCT motif 99 139 IPR010402 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0410 49 153 C2C2-CO-like Transcription Factor Family AT3G07650 41.228 1.27e-14 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi1g0410 CCT 7.6e-08 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0410 - - vvi:109123405 289.656