Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0394 ATGTCCATTGTTGCAGAGACTTCAAGATCATCGCAACACGCAAGGCTCAGGAGACCCAGAAAGCAGCCCACTTCAGCCCCAGATCCGACGCCCCAAACCCATTTAATCGTCCACCCAACCCGTAAAAAATCTACCATTTCTGGTTTGCTTGGCTCACCCTTCTCTGACACCAACGACAATGCTGCTAGTCTTTTGAGCAAGAAGACCAACAAGAAGAAGACATTTACGTCTGTGGCACTGAGTGGACTCGGGTGTGTCAAGTGTTTGTCGCCGGTGGTGGTTGGGTCGTCGGGGGAATGGGGGGCAAACAAAGTGAGGAAGAAGAAGAAGAAGAAACAGAGGATGAGAGTTGAGAATGCGACGGCTAAAACGACGACGTTGAATGGTGCAATGTCTCCACGTGTAGTGGTGGTGGTTCCTGACCTATGCTGTACTCCTGGGATTGGTTTAGCGGCCTCCAATGCTGCTTTGGTTGATTTTGTAGAACCAACAAGGTCCCTTTCTTCAAGAGGGAGGGTCAATGCTCACAGAACCAATAACAGAGAGCGTGGTCGGACAAGAAGGAGAGGCAGCGACCATGATCAGGCTTCTGGATCACATATCTCTAATGCTAGAAGATATGATGATTTTGGGCATGGCTCTTCTGGAGGTCTCTCTCGCTCAGAGATGATGATACTACAGAGTAGCCTACTGTTTGGAGAGAATGTGGAGGGATCTGATCGATATGGGGACTGGAGACTTGATGTTGACCACATGTCGTATGAGGAACTACTGGATTTGGGTGACAGAATTGGGTATGTAGGCACAGGCCTGAGAGAAGATGAGATATTCCGGTGCCTGAGGAACATGAAGCACCCGATTTTGGATTCCCTCCCCTTACTATCCTCCACCGGTGACAACTGGAGGTGCAGCATTTGTCAAGAGGAATACGAAGCTGATGATGAGGTGGGAAGGCTGGATTGTGGCCACTGCTATCACATACATTGTATTAGACAGTGGCTCCTGCGGAAAAATGCTTGTGCTGTTTGCAAAGCTGCGGCTGCGGCTTACAACTGA 1056 0.4953 MSIVAETSRSSQHARLRRPRKQPTSAPDPTPQTHLIVHPTRKKSTISGLLGSPFSDTNDNAASLLSKKTNKKKTFTSVALSGLGCVKCLSPVVVGSSGEWGANKVRKKKKKKQRMRVENATAKTTTLNGAMSPRVVVVVPDLCCTPGIGLAASNAALVDFVEPTRSLSSRGRVNAHRTNNRERGRTRRRGSDHDQASGSHISNARRYDDFGHGSSGGLSRSEMMILQSSLLFGENVEGSDRYGDWRLDVDHMSYEELLDLGDRIGYVGTGLREDEIFRCLRNMKHPILDSLPLLSSTGDNWRCSICQEEYEADDEVGRLDCGHCYHIHCIRQWLLRKNACAVCKAAAAAYN* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0394 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 349 IPR013083 -
Vvi1g0394 351 ProSiteProfiles Zinc finger RING-type profile. 303 344 IPR001841 -
Vvi1g0394 351 SUPERFAMILY RING/U-box 297 346 - -
Vvi1g0394 351 MobiDBLite consensus disorder prediction 168 216 - -
Vvi1g0394 351 MobiDBLite consensus disorder prediction 175 195 - -
Vvi1g0394 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 10 348 IPR045191 GO:0061630
Vvi1g0394 351 SMART ring_2 303 343 IPR001841 -
Vvi1g0394 351 Pfam Ring finger domain 303 344 IPR001841 -
Vvi1g0394 351 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0394 Vvi-Chr1 3727844 3729975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0394 220 347 C3H Transcription Factor Family AT2G15530 44.186 9.03e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0394 - - vvi:100252628 652.899