Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0393 ATGGATTCACATTCACAGGGCTTCCTTTGGAGCCCTCCAAGTCTCCACCCCGTTTACTACCAAACCAAGGAGGATGATGGGATTATTGATCTGGGTCTTAGTCTGAGAACTCTGCAGCCCCAAGTGTACCACCCAACTGGGCATAATGCATTTGAATCAGTGGGAAGCCTGGAGGGATATGGAGCATACGGTGAGCCGGTGGACTGGCCCCAGCTGGAAGCACAGTCTAGAAATTCAAATTCAGGATGTCCAAAAGTCATCCCAGAAGATTGTGAAGAGGAGACAGAGGGAGTCCAAAGCAAAGAGAGGTGGGCATATGTGAAGGTTAACATGGATGGGGTTGTAATTGGGAGGAAAATCTGCGTCCTTGATCTCGCTGGTTATTCAAGCTTGGCACTTCAGCTTGAAGACATGTTTGGTAGAGATTCCTTATCCGGGTTAAGGCTGTTCCAGAGAGAGTCTGAATTTGCCCTGTTTTACAAGGACAGAGAGGAGAATTGGAGGACTGTCGGTGATGTTCCATGGAAAGAATTTGTAGATAGCATCAAGCGTCTGAGAATTGTGCGAAAGAATGAAGCTCATTTTCCCTCTTCCTTGGAGTGTACTTAA 609 0.4713 MDSHSQGFLWSPPSLHPVYYQTKEDDGIIDLGLSLRTLQPQVYHPTGHNAFESVGSLEGYGAYGEPVDWPQLEAQSRNSNSGCPKVIPEDCEEETEGVQSKERWAYVKVNMDGVVIGRKICVLDLAGYSSLALQLEDMFGRDSLSGLRLFQRESEFALFYKDREENWRTVGDVPWKEFVDSIKRLRIVRKNEAHFPSSLECT* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0393 202 Gene3D - 99 199 - -
Vvi1g0393 202 ProSiteProfiles PB1 domain profile. 104 192 IPR000270 GO:0005515
Vvi1g0393 202 Pfam AUX/IAA family 67 193 IPR033389 -
Vvi1g0393 202 SUPERFAMILY CAD & PB1 domains 104 187 - -
Vvi1g0393 202 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 65 193 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0393 Vvi-Chr1 3720067 3721588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0393 107 190 B3 DNA Binding Superfamily AT1G35520 35.714 4.31e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vvi1g0393 AUX_IAA 1.1e-23 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0393 K14484 - vvi:100257765 405.216