Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0374 ATGTTCTTCAAGTCATCCTCCCCTCCATTTATAATTTCAACCATTTTTGCTTTATTATTAGTCATAGAAAAATCACTATGCGTGGATCCATACTTCAAGACCTGCAGCCTGAGCAGAACCTGCGGTGGTTTAAATATAGGCTTCCCATTTTATATTGAAGGCCTGCAAGACCCTCTCTGTGGCTACCTTGGGTTCAACGTTTCCTGCCTCCATAACACTACAATTCTCACCATATCCGAGAACCCTTACATCATCCACCAAATTTTCTACCAAAACCAGACTCTTCGAGTCTCAAACGCCTTAGGAAATGGCTGCCTTCCTTTGGGTCGCGACCTACTCCTTCCCAATGAAGAATTTGAGCTCTCTCATCCTGATGGCACCGACTTCTTTTTCTTTCTATCCAATTGTTCAGCTCCATTGCCTGATAATCTAGTACGCTACAAGATCAATTGTTCTGGCGACGATGGAGCAAGTCCGGTTCTGGCAATGTCTAAGGGAGATTCAAACTGGGTTCTGGCGTCCGAGAAGTGCGGAAGAGAGGTAAAAGCACCTTTTGAAGAGAAGGCAGATGATGGGAGTAATGAAATTGGGGAGGAATTGGTGAGAAGAGGGTTCATGCTGAAATGGAGAGCGAGCGACTGTAGCAAGTGCGAGGAGAGTGGTGGCAAGTGTGGATTCAATATCACTGACTACCATTTCAAGTGTTTCTGCCGCGATCGTGCTCATGCTAAGTACTGTGTTTCTAGGAATGACAAGGGCATGAAGTTAAGAGTTGCTCCAGCTGTTGGCATTGGGGTTCTGTTAGCAGTAGTTTTCTTCTTCTGCTTTTGGAGGAATTGCAAATCAATCAAACGAACAAAGAACCAACCAAATATTGAGGCCTTCTTAAGAAACCATGGATCCCTGGCTCTGAAAAGATATCGTCATTCCGATGTTAAAAAGATGACCAACTCATTCAAAGATAAAATCGGTGAAGGAGGATATGGTGATGTTTACAAAGGAAAGCTGCTTGATGGCCAAATGGTAGCAGTGAAGGTCTTGAATGAAACTAAAGGTAATGGAGAAGAATTTATCAATGAGGTTGCAAGCATCACCAGGACTTCCCACATCAATATTGTCAGTCTCCGGGGCTTTTGCTTTGAGGGTCCAAAAAGAGCTTTGATTTATGAGTTTATGCCAAATGGATCTCTTGAGAAGTACATATGTAATGGACACCATTCAAAGACAAATTGCCAATTGGGATGGGAAACATTGTATAAAATTGCAGTTGGCATAGCCCGAGGATTAGAGTACTTGCACCGTGGTTGTAATACACGAATTCTGCATTTTGACATAAAGCCTCATAACATTCTTCTCAGCGAAGATTTTTGCCCAAAGATCTCTGATTTTGGCCTTGCTAAACTTTGTACCAGGAAAGATAGTATCATATCCATGTTAGGCACAAGAGGGACTCCAGGATATATCGCTCCCGAGGTATTTTCTAGAGCTTTTGGTGGGGTCTCTCACAAGTCCGATGTTTACAGTTATGGAATGATGGTCTTAGATATGGTTGGAGGGAGAAAAGATGTTGATGGTGGAAGTAGTCACACTAGTGAAATATATTTTCCAGATTCCATATACAAGTGCATTGAAGAAGATGAAGATCTCGGACTGCCGGAGATTATGAATGGCGAGAGGGAGTGTACAAGGAAAATGATAATAGTGAGCTTGTGGTGCATACAAACAAGACCCTCAGATCGGCCACCAATGTGTCAAGTGCTGGACATGTTGGGAGGGAGCCTCCAATCGTTGCAAATCCCACCGAAGCCTTACTTGTTTTCTCCTCCAAGATCACTGCAAGATTCATCAACAACAACAGTATCATGA 1866 0.4303 MFFKSSSPPFIISTIFALLLVIEKSLCVDPYFKTCSLSRTCGGLNIGFPFYIEGLQDPLCGYLGFNVSCLHNTTILTISENPYIIHQIFYQNQTLRVSNALGNGCLPLGRDLLLPNEEFELSHPDGTDFFFFLSNCSAPLPDNLVRYKINCSGDDGASPVLAMSKGDSNWVLASEKCGREVKAPFEEKADDGSNEIGEELVRRGFMLKWRASDCSKCEESGGKCGFNITDYHFKCFCRDRAHAKYCVSRNDKGMKLRVAPAVGIGVLLAVVFFFCFWRNCKSIKRTKNQPNIEAFLRNHGSLALKRYRHSDVKKMTNSFKDKIGEGGYGDVYKGKLLDGQMVAVKVLNETKGNGEEFINEVASITRTSHINIVSLRGFCFEGPKRALIYEFMPNGSLEKYICNGHHSKTNCQLGWETLYKIAVGIARGLEYLHRGCNTRILHFDIKPHNILLSEDFCPKISDFGLAKLCTRKDSIISMLGTRGTPGYIAPEVFSRAFGGVSHKSDVYSYGMMVLDMVGGRKDVDGGSSHTSEIYFPDSIYKCIEEDEDLGLPEIMNGERECTRKMIIVSLWCIQTRPSDRPPMCQVLDMLGGSLQSLQIPPKPYLFSPPRSLQDSSTTTVS* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0374 621 ProSiteProfiles Protein kinase domain profile. 317 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0374 621 FunFam PR5-like receptor kinase 392 602 - -
Vvi1g0374 621 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Vvi1g0374 621 Pfam Protein kinase domain 320 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0374 621 SUPERFAMILY Protein kinase-like (PK-like) 301 590 IPR011009 -
Vvi1g0374 621 PANTHER RUST RESISTANCE KINASE LR10-RELATED 281 611 IPR045874 GO:0004672
Vvi1g0374 621 Gene3D Phosphorylase Kinase; domain 1 293 391 - -
Vvi1g0374 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Vvi1g0374 621 SMART serkin_6 317 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0374 621 FunFam serine/threonine-protein kinase PBS1-like 285 391 - -
Vvi1g0374 621 Pfam Wall-associated receptor kinase C-terminal 165 239 IPR032872 -
Vvi1g0374 621 Gene3D Transferase(Phosphotransferase) domain 1 392 599 - -
Vvi1g0374 621 Pfam Wall-associated receptor kinase galacturonan-binding 35 98 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0374 Vvi-Chr1 3548938 3552245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0374 14 603 Receptor kinase-like Gene Family AT5G38260 41.599 3.87e-140 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi1g0374 Pkinase 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0374 - - vvi:100247375 1279.62