Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0339 ATGAGGATGAGCTGCAATGGCTGTAGGGTTCTTCGCAAAGGTTGTAGTGATGACTGCAGTCTCAGACCCTGTCTTGAATGGATCAAAACTCCTGAATCCCAAGCCAATGCCACCGTCTTCCTAGCCAAGTTCTATGGCCGTGCCGGTCTCATGAACCTCCTCAATGCGGGGCCTGAGCACCTCCGTCCCGCCATATTCAGATCACTGCTTTACGAGGCCTGTGGACGAATCGTCAATCCTATATATGGATCGGTGGGGTTGCTATGGTCCGGGAACTGGAACCACTGCCAAAACGCGGTTGATGCAGTGCTTGGAGGATCGCAGATCATGGAAGTCCCTTGCGATACCGCTGCGATCCGCCCTATCCTTCCGCTCAAGGCGTATGACATACGCCACCTATCCAAGGACGCAAACTCTCCTCATGACCTTCACAAGGCTAAAACTCGAAGCCGGTTCAAGCGGTGTGGTGCTCGATCCAAACCCCATTTGGATTCGGCTGAGTTTTGTAACCCTGGATGGAACCAGTTTTCCCCGGTCGACTACAACCGAACGCCCAGTCACGACTCCTCTCTGATTCAGCAGGAGACTGACAGCATGTTCTCTGTGGAAACCGTGGAGGCTTCGCTGGCGACTCCCCCAAAACCAAACCAACTTCTGAAATCCGATGGCCAAACCGATAAAACCGAGGCTGGGTTGGAACTCACTCTTGGCTTCTATCCAATCTCACGCCCCCACGCGTGTAAGCTGGAGCTGGGGCCTTGA 762 0.5394 MRMSCNGCRVLRKGCSDDCSLRPCLEWIKTPESQANATVFLAKFYGRAGLMNLLNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWNHCQNAVDAVLGGSQIMEVPCDTAAIRPILPLKAYDIRHLSKDANSPHDLHKAKTRSRFKRCGARSKPHLDSAEFCNPGWNQFSPVDYNRTPSHDSSLIQQETDSMFSVETVEASLATPPKPNQLLKSDGQTDKTEAGLELTLGFYPISRPHACKLELGP* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0339 253 Pfam Lateral organ boundaries (LOB) domain 4 101 IPR004883 -
Vvi1g0339 253 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vvi1g0339 253 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0339 Vvi-Chr1 3210505 3211373 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0339 1 245 AS2 family AT3G02550 54.365 6.73e-84 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi1g0339 LOB 5.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0339 - - vvi:100254184 531.946