Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0326 ATGAAGATTTTCGTCAAGACTTTGAAAGGAACTCACTTCGAAATCCAAGTGAAACCTGAAGATACAGTTGCTGATGTGAAGGCAAATATAGAGGCAGTTCAAGGATCAGATGTTTATCCTGCTTCACAACAGATGCTTATCCATCAAGGAAAGGTTCTTAAGGATGGCACAACATTGGATGAAAACAAAGTTGCTGAAAATAGTTTTGTAGTTGTCATGTTATCAAAGAATAAGAACTCATCTGAAGGTTCAACCGCATCAACTGCACCTGCACCTGCACCTGCACCTGCACCTACACCTATAGTTAAGGCTCCATCTGCAAGTGCCCCTCCTCCAACTACAACTTCAACATTAACAGCACCTCAAGCTCCTGTAGTAGCCTTGCCACCGCCTGCAACCGTACCTGCCCCTGCTCCAGCTGCAACTCCAGCATCTACAGTCACTGTTGTATCTGAGACTGATGCCTATGGCCAAGCAGCTTCAAATCTAGTTGCAGGAAACAATTTTGAGGAAGCTATCCAACAAATTCTTGATATGGGGGGAGGGACTTGGGACAGGGACACTGTTGTCCGTGCTCTTCGTGCTGCATATAATAACCCAGAGCGTGCAGTTGAATATCTATATTCTGGTATCCCTGAGCAAGCTGAAGTTCCACCTGTGGCTCGTGCCCCTGCCAGTGGGCAAGCTGCAAATCCTCCAGCCCAATCTCAGCAACCAGTACCTGCTCCTTCAAGTGGGCCCAATGCAAATCCATTAGATCTTTTCCCCCAGGGCATTCCCAATGTGGGTTCAAATCCTGCTGGTGCAGGGACCTTGGATTTTCTTCGCAACAGCCAACAATTCCAAGCTTTGCGAGCTATGGTGCAAGCTAATCCACAAATCTTGCAGCCTATGCTTCAAGAGCTTGGAAAACAAAATCCTCAGCTAATGAGGCTTATTCAAGAACATCAGGCTGATTTCCTTCGCCTTATCAATGAACCTGTAGAAGGGGGAGAGGGGAACATACTAGGGCAGCTTGCTGCAGCAATGCCACAGGCAGTGACAGTGACGCCGGAGGAACGGGAAGCCATAGCTCGTCTTGAAGCAATGGGTTTTGACCGTGCCCTGGTGTTGGAGGTGTTCTTTGCCTGCAACAAGAATGAGGAGCTGGCTGCCAACTATCTTTTAGACCACATGCATGAGTTCGAGGATTGA 1194 0.4774 MKIFVKTLKGTHFEIQVKPEDTVADVKANIEAVQGSDVYPASQQMLIHQGKVLKDGTTLDENKVAENSFVVVMLSKNKNSSEGSTASTAPAPAPAPAPTPIVKAPSASAPPPTTTSTLTAPQAPVVALPPPATVPAPAPAATPASTVTVVSETDAYGQAASNLVAGNNFEEAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVARAPASGQAANPPAQSQQPVPAPSSGPNANPLDLFPQGIPNVGSNPAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGGEGNILGQLAAAMPQAVTVTPEEREAIARLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0326 397 FunFam UV excision repair protein RAD23 homolog 344 392 - -
Vvi1g0326 397 SUPERFAMILY XPC-binding domain 268 334 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vvi1g0326 397 CDD UBA1_Rad23_plant 163 212 - -
Vvi1g0326 397 PRINTS DNA repair protein Rad23 signature 364 378 IPR004806 GO:0006289
Vvi1g0326 397 PRINTS DNA repair protein Rad23 signature 298 320 IPR004806 GO:0006289
Vvi1g0326 397 PRINTS DNA repair protein Rad23 signature 379 394 IPR004806 GO:0006289
Vvi1g0326 397 PRINTS DNA repair protein Rad23 signature 347 363 IPR004806 GO:0006289
Vvi1g0326 397 MobiDBLite consensus disorder prediction 220 263 - -
Vvi1g0326 397 SMART uba_6 353 390 IPR015940 -
Vvi1g0326 397 SMART uba_6 169 209 IPR015940 -
Vvi1g0326 397 Gene3D - 162 212 - -
Vvi1g0326 397 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 167 210 IPR015940 -
Vvi1g0326 397 CDD Ubl_Rad23 1 74 - -
Vvi1g0326 397 SMART CBM 270 313 IPR006636 -
Vvi1g0326 397 MobiDBLite consensus disorder prediction 79 119 - -
Vvi1g0326 397 FunFam UV excision repair protein RAD23 1 80 - -
Vvi1g0326 397 Gene3D - 1 80 - -
Vvi1g0326 397 Coils Coil 392 397 - -
Vvi1g0326 397 SUPERFAMILY UBA-like 334 395 IPR009060 GO:0005515
Vvi1g0326 397 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 350 391 IPR015940 -
Vvi1g0326 397 SUPERFAMILY UBA-like 166 222 IPR009060 GO:0005515
Vvi1g0326 397 Coils Coil 299 319 - -
Vvi1g0326 397 SUPERFAMILY Ubiquitin-like 1 85 IPR029071 -
Vvi1g0326 397 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Vvi1g0326 397 Gene3D - 345 392 - -
Vvi1g0326 397 NCBIfam UV excision repair protein Rad23 1 396 IPR004806 GO:0006289
Vvi1g0326 397 MobiDBLite consensus disorder prediction 91 107 - -
Vvi1g0326 397 Pfam XPC-binding domain 272 327 IPR015360 GO:0003684|GO:0006289|GO:0043161
Vvi1g0326 397 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Vvi1g0326 397 Gene3D - 263 328 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vvi1g0326 397 FunFam UV excision repair protein RAD23 B 263 328 - -
Vvi1g0326 397 Pfam UBA/TS-N domain 170 207 IPR015940 -
Vvi1g0326 397 Pfam UBA/TS-N domain 353 388 IPR015940 -
Vvi1g0326 397 SMART ubq_7 1 75 IPR000626 GO:0005515
Vvi1g0326 397 FunFam UV excision repair protein RAD23 homolog 162 212 - -
Vvi1g0326 397 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0326 Vvi-Chr1 3084529 3092651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0326 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 1.43e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0326 K10839 - vvi:100245820 651.744