Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0294 ATGTATACCTCTTTCTCATCTTCAGAACAACGCTCCTCTCTTTTGCTTGTGTCTCTGAACATGGACGGAAGTTGCATAGATGAGAGTACTACTAGTGATTCTATTTCAACGTCGCTGCCCGCTTTATCTGCTCTGCCGGCAACCAAGTCGCCGGAGAGTTTGTGCAGAGTTGGGAGTGGGACGAGTGTGATACTGGACTCCGAGAGCAGTATCGAGGCTGAGTCTAGGAAGCTTCCCTCCTCCCGATTCAAGGGAGTGGTGCCTCAGCCCAACGGACGGTGGGGTGCCCAGATTTATGAGAAGCACCAGAGGGTGTGGCTGGGAACGTTCAATGAAGAGGAAGAAGCTGCCAAGGCTTACGACATCGCGGCGCAGAGGTTCCGTGGCCGCGACGCGGTTACTAACTTCAAACCATTGTCGGAGACGGAGGAGGACGATATCGAAGCCGCGTTCTTGAATTCTCATTCCAAGGCGGAGATCGTGGACATGCTGAGGAAACACACGTACAATGATGAGCTGGAGCAAAGCAAGCGAAACTACGGGTTGGACGCGAATGGGAAGAGGAGCCGAGCCGAAGGCCTCATGACTCCATTCGGGTCAGACCGGGTCACCAAATCCCGGGAGCAGCTCTTCGAGAAGACGGTGACGCCCAGCGACGTGGGTAAGCTAAACCGGCTGGTGATACCCAAACAACACGCGGAAAAGCACTTCCCCTTGCAGACTGGAACCACATCCAAAGGGGTGCTTCTGAATTTCGAAGACATGGGCGGGAAAGTATGGAGGTTTCGATACTCGTACTGGAACAGCAGCCAGAGCTACGTTCTGACCAAAGGGTGGAGCCGGTTCGTGAAGGAGAAGAACCTTAAGGCGGGAGACATTGTGAGTTTCCAGAGATCGACGGGAGGGGACAAGCAGCTGTACATAGACTGGAAGGCCAGAAACGGCCCGACGAATCAGATCAATCCGGTAGAGCCGGTGGAGATGGTGAGGTTATTCGGAGTCAACATTTTCAAAGTACCCGTAAATAGCAGTGTGGTTGTGGCTAACAATGGTAGTTGGACTGGTAAGAGAATGATAGAAATGGAGCTCCTGTCCTTCGAATGTAGTAAAAAACAGAGGGTAATCGGAGCTGTGTAA 1137 0.5259 MYTSFSSSEQRSSLLLVSLNMDGSCIDESTTSDSISTSLPALSALPATKSPESLCRVGSGTSVILDSESSIEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAAKAYDIAAQRFRGRDAVTNFKPLSETEEDDIEAAFLNSHSKAEIVDMLRKHTYNDELEQSKRNYGLDANGKRSRAEGLMTPFGSDRVTKSREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLQTGTTSKGVLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGGDKQLYIDWKARNGPTNQINPVEPVEMVRLFGVNIFKVPVNSSVVVANNGSWTGKRMIEMELLSFECSKKQRVIGAV* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0294 378 Gene3D AP2/ERF domain 81 138 IPR036955 GO:0003700|GO:0006355
Vvi1g0294 378 CDD B3_DNA 210 299 IPR003340 GO:0003677
Vvi1g0294 378 Gene3D - 199 321 IPR015300 -
Vvi1g0294 378 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 77 347 IPR044800 GO:0003700
Vvi1g0294 378 CDD AP2 81 136 IPR001471 GO:0003700|GO:0006355
Vvi1g0294 378 FunFam AP2 domain-containing protein RAP2.8 81 138 - -
Vvi1g0294 378 Pfam AP2 domain 82 129 IPR001471 GO:0003700|GO:0006355
Vvi1g0294 378 SMART B3_2 211 314 IPR003340 GO:0003677
Vvi1g0294 378 Pfam B3 DNA binding domain 211 311 IPR003340 GO:0003677
Vvi1g0294 378 ProSiteProfiles B3 DNA-binding domain profile. 211 314 IPR003340 GO:0003677
Vvi1g0294 378 ProSiteProfiles AP2/ERF domain profile. 82 137 IPR001471 GO:0003700|GO:0006355
Vvi1g0294 378 SMART rav1_2 82 143 IPR001471 GO:0003700|GO:0006355
Vvi1g0294 378 SUPERFAMILY DNA-binding domain 81 137 IPR016177 GO:0003677
Vvi1g0294 378 SUPERFAMILY DNA-binding pseudobarrel domain 207 312 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0294 Vvi-Chr1 2751583 2752719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0294 21 375 B3 DNA Binding Superfamily AT1G25560 63.130 1.20e-153 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Vvi1g0294 B3 1.5e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0294 K09287 - vvi:100262843 724.161