Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0281 ATGTGTGGAAAGAAGGAAGAAGATCAAGGAGAGTGTTCTCAGACCATCCATAACATACAAGGCTACCAAGAACAATTACTTCTCCAACAACACCATCAGATGCAACAACAAAACAATGATGCATATGGAGGTGGAGGAGGAAGGTCTGGATTGATATTTCCTGAAGTCTCACCAATCCTGCAGCCATGGTCTTTCCCTCCGGTCCACGCCTTCAACCCGGCTCACTTCGCTGCAAACCCGGTTCGAGACCACGACCCATTTCTTGTTCCTCCTCCCCCATCTGCATACGGGAGTGTATTCAACAGAAGAGCTCCAGCCCTACAGTTTGCATATGAGGGTCCATCATCAGAGCACCTCAGAATCATTTCAGACACCCTTGGACCGGTGGTTCAACCCGGTTCCTCCCCTTTTGGGCTTCAAGCTGAGTTGGGTAAGATGACTGCTCAGGAGATTATGGATGCAAAGGCCCTTGCAGCTTCTAAGAGCCACAGTGAGGCTGAGAGGAGAAGAAGAGAGAGAATCAACAACCATCTAGCTAAACTGCGCAGCTTACTGCCCAGCACCACCAAAACGGACAAAGCTTCACTGCTAGCAGAAGTGATACAGCATGTTAAAGAACTTAAACGACAGACATCTCTGATTGCAGAGTCTAGTCCGGTACCAACTGAAATGGATGAGCTAACGGTGGATACATCTGACGAGGATGGTAAGTTTGTGATCAAGGCTTCACTGTGCTGTGAAGACAGAACGGATCTCTTGCCCGACCTTATCAAGACCTTGAAAGCTCTAAGGTTAAGAACACTGAAAGCTGAGATCACAACGCTGGGGGGACGTGTGAAGAACGTCTTGTTCATCACCGGAGAGGAAGATTCTAGTAGTAGTGGTGAAAACCAGCAGCAGCAGCAACAGCAACAGCAACAGTACTCTATAAGTTCAATTCAGGAAGCACTTAAGGCAGTGATGGAGAAGACAGGTGGTGATGAGTCTTCATCAGGTAGTGTTAAGAGACAAAGAACCAATATCAATATCATTGAACACAGATCTCTTTAA 1050 0.4714 MCGKKEEDQGECSQTIHNIQGYQEQLLLQQHHQMQQQNNDAYGGGGGRSGLIFPEVSPILQPWSFPPVHAFNPAHFAANPVRDHDPFLVPPPPSAYGSVFNRRAPALQFAYEGPSSEHLRIISDTLGPVVQPGSSPFGLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAESSPVPTEMDELTVDTSDEDGKFVIKASLCCEDRTDLLPDLIKTLKALRLRTLKAEITTLGGRVKNVLFITGEEDSSSSGENQQQQQQQQQQYSISSIQEALKAVMEKTGGDESSSGSVKRQRTNINIIEHRSL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0281 349 MobiDBLite consensus disorder prediction 288 341 - -
Vvi1g0281 349 MobiDBLite consensus disorder prediction 288 314 - -
Vvi1g0281 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 214 IPR036638 GO:0046983
Vvi1g0281 349 SMART finulus 164 213 IPR011598 GO:0046983
Vvi1g0281 349 Pfam Helix-loop-helix DNA-binding domain 161 207 IPR011598 GO:0046983
Vvi1g0281 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Vvi1g0281 349 PANTHER TRANSCRIPTION FACTOR BHLH30 38 341 IPR045847 GO:0003700|GO:0006355
Vvi1g0281 349 FunFam transcription factor bHLH30 153 216 - -
Vvi1g0281 349 CDD bHLH_AtAIG1_like 153 230 - -
Vvi1g0281 349 Gene3D - 153 214 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0281 Vvi-Chr1 2606645 2608392 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0281 1 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 55.497 2.26e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi1g0281 HLH 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0281 - - vvi:100250878 631.713