Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0189 ATGGCGTCTTCTCTCTGCAACTGGCTGATCTTCTGTCTGGTTCTACAGGCGATGACGGCGGCTGCCTCGGTGGCCGGAGCGGAGGAATTACAGCAAGAGAAAGACAGAGTTAAGGATTTGCCGGGACAGCCGGCGGTGGAGTTCCGGCACTACGCAGGGTACGTGAAACTCCGGCCACAAGACGAGAAAGCACTCTTCTACTGGTTCTTTGAAGCCCAAGGCGGTGTTCTTGAAAAGCCTCTTGTGCTTTGGCTCAATGGAGGACCTGGATGCTCATCCATAGCTTATGGAGCTGCACAAGAACTCGGTCCGTTTCTTGTTAGGAGCAACGGAACTAAGCTTATCCTTAATGATTTTTCCTGGAACAAAGTTGCAAACATTCTGTTCCTGGAGGCACCTGTGGGAGTAGGGTTTTCATACACGAACAAATCATCGGATTTACTTAAGCTTGGTGATCGAATCACAGCTGAAGATTCTCATGCATTCTTAGTCCAATGGTTCAAGAGGTTCCCCAGCCTCAAAACCCATGATTTCTACATCACTGGAGAGAGCTATGCTGGTCACTATGTTCCTCAGCTTGCTGAGCTCATTTATGAAAGGAACAAAAGAAGCAGCAAAGACTTTTACATTAATCTCAAGGGTTTCATGATTGGGAATGCAGTAATCAATGATGAAACGGACGATATGGGCCTCATTGAGTTCGCATGGAGTCATGCAATCATATCAGACCAAATCTACCATGGCATAATGAAGAATTGCGACTTCAAAAGTGGCAACCTTACAAACCTCTGCATTAAATATGTCGAGGGCTTCTTCGAGGCTTATCTCGATATCGACGTGTATAGCATTTACACACCTGTGTGCCTCAGTTCTTCCAAAGAAACCTACCGAAAACTTGTCACTGCACCAAGACTCTTCGCACAACACGACCTCTGGCATCAGCTACCATCGGGATACGATCCATGTACAGAAGATTATGCTGAGAAATATTTCAACAGGGAGGATGTTCAGAAGGCCCTTCATGCCAATGTCACCAAACTCCCCTATCCATACACCACATGCAGTAAAGTTATTAGGAGGTGGAATGATTCGCCAGACACCGTGCTGCCCACCATTCAGAAGCTCTTAAAGGCTGGTCTGCGCATTTGGGTCTACAGTGGGGACACAGATGGGAGGGTGCCAGTGACATCAACAAGGTACAGCATAAACAAGATGGGGTTAAGGATTCAGCAAAAGTGGAGGGCATGGTTCGACAGGAAACAAGTGGCCGGTTGGGTGGTGACTTATGAGGGTGGCCTTACACTAGCAACCGTAAGAGGTGCAGGTCACCAGGTCCCCATCCTTGCACCTTCTCAGTCCCTTGCTCTCTTCTCTCATTTCCTCTCGGATGCCACCTTGCCGTCTTCCAGAGCCTAG 1416 0.4816 MASSLCNWLIFCLVLQAMTAAASVAGAEELQQEKDRVKDLPGQPAVEFRHYAGYVKLRPQDEKALFYWFFEAQGGVLEKPLVLWLNGGPGCSSIAYGAAQELGPFLVRSNGTKLILNDFSWNKVANILFLEAPVGVGFSYTNKSSDLLKLGDRITAEDSHAFLVQWFKRFPSLKTHDFYITGESYAGHYVPQLAELIYERNKRSSKDFYINLKGFMIGNAVINDETDDMGLIEFAWSHAIISDQIYHGIMKNCDFKSGNLTNLCIKYVEGFFEAYLDIDVYSIYTPVCLSSSKETYRKLVTAPRLFAQHDLWHQLPSGYDPCTEDYAEKYFNREDVQKALHANVTKLPYPYTTCSKVIRRWNDSPDTVLPTIQKLLKAGLRIWVYSGDTDGRVPVTSTRYSINKMGLRIQQKWRAWFDRKQVAGWVVTYEGGLTLATVRGAGHQVPILAPSQSLALFSHFLSDATLPSSRA* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0189 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 433 446 IPR001563 GO:0004185|GO:0006508
Vvi1g0189 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Vvi1g0189 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Vvi1g0189 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Vvi1g0189 471 Gene3D alpha/beta hydrolase 31 290 IPR029058 -
Vvi1g0189 471 Gene3D - 322 359 - -
Vvi1g0189 471 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 447 IPR001563 GO:0004185|GO:0006508
Vvi1g0189 471 FunFam Carboxypeptidase 318 466 - -
Vvi1g0189 471 Gene3D - 368 462 - -
Vvi1g0189 471 FunFam Carboxypeptidase 31 290 - -
Vvi1g0189 471 ProSitePatterns Serine carboxypeptidases, histidine active site. 433 450 IPR033124 GO:0004185
Vvi1g0189 471 SUPERFAMILY alpha/beta-Hydrolases 37 465 IPR029058 -
Vvi1g0189 471 ProSitePatterns Serine carboxypeptidases, serine active site. 180 187 IPR018202 GO:0004185
Vvi1g0189 471 Pfam Serine carboxypeptidase 42 462 IPR001563 GO:0004185|GO:0006508
Vvi1g0189 471 FunFam Carboxypeptidase 368 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0189 Vvi-Chr1 1710146 1715609 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0189 327 466 Calmodulin-binding Proteins AT2G22960 29.286 1.59e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0189 K16297 - vvi:100247487 970.304