Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0140 ATGGCTTCCGGAATCGAGTTTGAGGAAGACAGTGAAAACAAAGGTAGTATGTGGGTTTTGGATCAGAAGCTTGATCAGCCCATGGATGAGGAGGCTGGCAGGCTTAGAAATATGTACAGAGAAAAGAAATTCTCGGCAGTATTGCTTCTTCGGCTTGCATTTCAGAGTCTTGGAGTGGTCTATGGAGACTTGGGCACATCTCCCTTATATGTTTTCTATAATACATTTCCTCGTGGAATCGAAGATCCTGAGGATGTGGTTGGGGCTCTTTCGTTGATCATATACTCCCTTACACTTATTCCGCTGCTCAAGTATATTTTTGTTGTGTGTAGAGCAAATGATAATGGCCAAGGTGGAACATTTGCTCTTTATTCATTACTTTGTCGACATGCAAAAATAAATACTATTCCTAATCAACATCGAACTGATGAAGAGCTTACAACATATAGTCGTACTACATTCCATGAACATTCTTATGCTGCAAAAACAAAAAGATGGTTGGAGGGGCATGCATCTAGGAAGAACATGCTCCTTATTCTTGTCCTTGTTGGTACATGCATGTTGATTGGAGATGGTATTCTCACTCCTGCTATATCAGTTCTTTCTGCTGCTGGTGGGATCAAGGTGGATCACCCTGGGATGAGTAATGAGATAGTTGTTCTTGTCGCTGTTGTAATCTTAGTAGGTTTGTTTAGCATGCAACATTATGGTACAGATAGAGTTGGTTGGCTCTTTGCTCCAATTGTTCTGCTTTGGTTTCTTGTGATTGGAGGTATTGGTATATTCAACATCTGGAAGTATGATAGCAGTGTTCTGAAAGCATTTTCACCTGTGTACATATATCGGTATTTTAAAAGGGGAGGGAGAGATGGTTGGACCTCTCTTGGAGGGATCATGCTTAGTATCACTGGGACGGAGGCACTTTTTGCCGACCTAGCCCATTTTCCAGTTTCAGCTGTACAGCTTGCGTTCACAGTAGTTGTATTTCCTTGCCTTCTTTTAGCCTATTCTGGACAAGCTGCATACCTCGTGAAAAACCAGGATCATGTGGTTGACGCATTCTATCGTTCTATTCCAGACAGCATATACTGGCCAGTGTTTGTTGTTGCAACTGCAGCTGCTATTGTTGCGAGTCAGGCGACCATATCTGCAACTTTTTCGATAATCAAACAGGCCCTTGCTCTTGGCTGTTTTCCAAGAGTCAAAGTTGTACATACATCAAAGAAGTTTCTTGGCCAGATATATATTCCAGATATTAATTGGGTCCTTATGGTTCTTTGCATTGCTGTGACTGCTGGGTTCAAAAATCAAAGCCAAATTGGCAATGCGTATGGGACAGCTGTCGTGATAGTCATGCTGGCAACCACATTTCTGATGATATTAATTATGTTATTAGTGTGGCGCTGCCACTGGCTTCTTGTCTTAATCTTCACTGGCTTATCACTGGCGGTGGAGTGCACTTACTTCTCTGCCGTACTTTTCAAGGTCGATCAAGGCGGTTGGGTCCCTCTTGTGATTGCAGCTGCTTTTCTCATTATCATGTACGTCTGGCATTATGGTACAGTGAAGCGCTATGAGTTTGAGATGCACAGTAAGGTTTCAATGGCGTGGATTCTTGGGCTTGGCCCTAGTTTAGGGCTTGTCCGTGTCCCTGGTATTGGACTTGTGTACACTGAGCTAGCGAGTGGGGTGCCCCACATTTTCTCCCACTTCATCACAAACCTACCAGCCATCCATTCTGTCGTTGTTTTTGTCTGTGTCAAGTACCTTCCTGTCTACACTGTTCCAGAAGAAGAGAGGTTCCTTGTCAAGCGGATTGGACCCAAGAATTTCCACATGTTCCGTTGTGTTGCAAGATATGGTTACAAAGACCTCCATAAGAAAGATGATGATTTTGAGAAAAAGCTCTTCGATAATCTCTTCATGTTTGTGAGGCTAGAGTCCATGATGGAAGGGTGCTCAGACTCAGACGAGTATAGTCTCTATGGCCAAACCGAGCAATCAAGGGACTGCCTGTTGAATGATAATGGCAACACTAATTCCTCCAACTTGGACCTGACAATTTCATCAGTGGATTCAATTGTGCCGGTGAAATCTCCATTGCACGCTAGCAATACTGTCACATCGTCAGGTCATACCAGCAACCAGACAGAGGGTGATGAGTTGGAATTCATGAACAACTGTAGATCTGCAGGGGTGGTGCACATACTGGGAAACACGGTAGTGAGAGCTAGGAGGGATTCAAGATTCTACAAGAAGATAGCTGTTGATTATATATATGCATTTCTCAGGAAGATATGTAGGGAGAACAGTGTGATCTTTAATGTTCCTCACGAGAGTCTTTTGAACGTTGGGCAGATATTCTATGTTTAA 2373 0.4324 MASGIEFEEDSENKGSMWVLDQKLDQPMDEEAGRLRNMYREKKFSAVLLLRLAFQSLGVVYGDLGTSPLYVFYNTFPRGIEDPEDVVGALSLIIYSLTLIPLLKYIFVVCRANDNGQGGTFALYSLLCRHAKINTIPNQHRTDEELTTYSRTTFHEHSYAAKTKRWLEGHASRKNMLLILVLVGTCMLIGDGILTPAISVLSAAGGIKVDHPGMSNEIVVLVAVVILVGLFSMQHYGTDRVGWLFAPIVLLWFLVIGGIGIFNIWKYDSSVLKAFSPVYIYRYFKRGGRDGWTSLGGIMLSITGTEALFADLAHFPVSAVQLAFTVVVFPCLLLAYSGQAAYLVKNQDHVVDAFYRSIPDSIYWPVFVVATAAAIVASQATISATFSIIKQALALGCFPRVKVVHTSKKFLGQIYIPDINWVLMVLCIAVTAGFKNQSQIGNAYGTAVVIVMLATTFLMILIMLLVWRCHWLLVLIFTGLSLAVECTYFSAVLFKVDQGGWVPLVIAAAFLIIMYVWHYGTVKRYEFEMHSKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHKKDDDFEKKLFDNLFMFVRLESMMEGCSDSDEYSLYGQTEQSRDCLLNDNGNTNSSNLDLTISSVDSIVPVKSPLHASNTVTSSGHTSNQTEGDELEFMNNCRSAGVVHILGNTVVRARRDSRFYKKIAVDYIYAFLRKICRENSVIFNVPHESLLNVGQIFYV* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0140 790 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 42 788 IPR003855 GO:0015079|GO:0016020|GO:0071805
Vvi1g0140 790 NCBIfam potassium uptake protein 52 789 IPR003855 GO:0015079|GO:0016020|GO:0071805
Vvi1g0140 790 Pfam K+ potassium transporter 53 624 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0140 Vvi-Chr1 1316104 1325327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0140 8 790 Inorganic Solute Cotransporters AT2G35060 82.398 0.0 1290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0140 K03549 - vvi:100264706 1544.64