Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0125 ATGGCGAGAAACTCCGTTCTTCTGCGACACCTCCTTCGATTCTCTCCCTCGTCTCGCGCTCGTTCTTCTTCTCTGATCGAGACCCTAGCTTCATCTCCGATTGCTGTCCCATCCCCTCCCATTCATACAATTTCCTCCTTTTTCACCACCGCCACCGCTAACTCTCAGTTCTCGCGGCCTTGTTTGAATTACCGCACACTTTGCTCTTCCTCAGGTCAATCAAAAATTGCTCTGATTAAATCAGAAGAAGAGTTCAATACTTCACTTAGCAAGGTTCAAGATGAATCTTTGCCTGCAATTTTCTACTTCACTGCAGTATGGTGTGGGCCTTGCAGGTTTATAGCTCCTATCATAGCAGAGTTGAGTGAAAAGTACCCTCATGTCACCACATACAAGATTGACATTGATCAGGATGGGCTTGAAAACACCCTAAGAAGGTTAAATATTGCCTCCGTGCCAACACTCCACTTCTTTCAAAATGGGAAAAAGGCAGCTGAAATAATCGGTGCTGATGTTGCCCGCTTGAAGGATACCATGGATAAACTCTACAAGAAGGACTGA 561 0.4545 MARNSVLLRHLLRFSPSSRARSSSLIETLASSPIAVPSPPIHTISSFFTTATANSQFSRPCLNYRTLCSSSGQSKIALIKSEEEFNTSLSKVQDESLPAIFYFTAVWCGPCRFIAPIIAELSEKYPHVTTYKIDIDQDGLENTLRRLNIASVPTLHFFQNGKKAAEIIGADVARLKDTMDKLYKKD* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0125 186 PRINTS Thioredoxin family signature 148 159 - -
Vvi1g0125 186 PRINTS Thioredoxin family signature 107 116 - -
Vvi1g0125 186 PRINTS Thioredoxin family signature 99 107 - -
Vvi1g0125 186 ProSiteProfiles Thioredoxin domain profile. 55 184 IPR013766 -
Vvi1g0125 186 CDD TRX_family 83 171 - -
Vvi1g0125 186 SUPERFAMILY Thioredoxin-like 70 184 IPR036249 -
Vvi1g0125 186 Pfam Thioredoxin 81 180 IPR013766 -
Vvi1g0125 186 PANTHER THIOREDOXIN 77 180 - -
Vvi1g0125 186 FunFam Thioredoxin 73 184 - -
Vvi1g0125 186 Gene3D Glutaredoxin 71 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0125 Vvi-Chr1 1187551 1190963 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0125 K03671 - vvi:100261132 353.599