Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0116 ATGAGCAAGCTTCAGTTCTATCCATATAGAATCTTAACAATCTCATCTCTTCTTATCCTCTTTCAACCTCTGCTGGTCTCCTCACTATGCACATGTGAGACACAGCACAAGGATCAAAACGCATCCCAGGCAGTCACATATAAACTAGTTGCTATAGCTTCAATTCTAGTTTCCAGTGCAATTGGGGTCTGCCTTCCATTGCTGCTCAAAAATGTTCCATCCTTACGACCCGAAAAGGCGATTTACTTCCTGATAAAGGCCTTTGCTGCAGGAGTGATTCTGGCAACTGGGTTCCTTCATATACTCCCTGATGCCTACGACAGCCTGAAGAGCCCATGCCTCAGTGAAAATCCATGGGGGGGTTTTCCTTTCACTGGCTTCATTGCCATGATGGCTGCAATTTTGACACTGATGATGGAAGCTTTTGCGACTGGCTACCATAGGAGGTCAGAGCTGAGGAAAGCTCAGCCAGTGAATGGTGATGAGGAGAGTGATGGGGACCATGCAGGCCATGTCCATGGCTCCGCCTTTGTGCTGGAGAGATCCAACTCCTCTGATCTTATCCGGCACCGGGTCGTTTCTCAGGTTTTGGAGTTGGGAATTGTGGTACACTCTGTGATCATTGGCATCTCCTTGGGGGCTTCTGAGAGTCCAAAGACAATCAAACCTTTGGTAGCAGCATTGAGCTTCCACCAGTTTTTTGAGGGGATGGGGCTAGGTGGATGCATCTCTCAGGCAAAGTACAAGATTAAAGCTACCATAATCATGGTTCTGTTCTTCTCCCTCACAACCCCAACTGGGATTGCTGTTGGCCTAGGGATATCGAAAATTTACGACGAAAACAGCCCAACTGCACTTATTGTTCAAGGGGTCCTGAATTCGGCATCAGCTGGGATTTTGATCTACATGGCTCTTGTTGATCTTCTTGCAACTGACTTCATGAACCCCAAAATGCAAAGCAATGTGAGACTCCAACTTGGGGCATATGCTACTCTTCTTTTGGGGGCAGCTTCTATGTCAGTTCTGGCCAAATGGGAAGAACAGAGCAGCAGAACAGGCGCTACCCGATACAAATTGGCTGCCATTTTCTCGATTCTTGCCGCGAGTTTAATTGGGGTGGCGCTCCCAACCTTGGGCAAGAAAATCCCGGCATTGCGCCCGGAAAACGATGTGTTCTTCGCCGTGAAGGCCTTTGCTGCCGGGGTGATTCTGGCGACCGGGTTCATTCACGTGTTGCCGGATGCGTTCGAGTCTCTGACGAGCCCCTGCCTCGGCGAGAGCCCGTGGGGGAGTTTTCCGTTTAGTGGGTTCGTCGCTATGCTTTCGGCGATCGGGACGATGATGATGGATGCTTTTGCCACTGGGTTCTACCAGAGGTTGCAGCGGAGCAAGGCTCAGCCGGTGAAGGAAGACGAGGAAATGCAATGTGAGAATCAGGACCAGGTGCATGGTCATCCACATGGGTCCGGCTTCGTCTCCGGTGAACTGGGATCTCCGGAGCTAGCCCGCCACCGTGTGATAGCTCAGGTTTTGGAGTTGGGGATTGTAGTTCATTCGGTGATTATTGGGATTTCCTTGGGAGCTTCTGAAAGTCCAAAGACAATCAAGCCTCTTGTGGCTGCATTGTCCTTCCATCAGTTCTTTGAAGGCATGGGCCTTGGTGGATGCATTTCCCAGGCAAAATTCAAGTCTAAGGCAGTTGCAGTGATGGTGGTTTTCTTCTCCCTGACCACTCCAGTTGGGATAGCAGTTGGCATGGGGATATCAAATATTTACGACGAAAACAGCCCGAAGGCTCTGGTGGTGGAAGGAGTTTTCAACTCAGCCTCAGCTGGGATATTGATCTACATGGCCCTTGTCGACCTTGTTGCAGCAGACTTCATGAGCCCTAGAATGCAAACCAATTTCAAGCTCCAAATTGCAGCCAATATCTTGCTTCTTCTTGGTACAGCCTGCATGTCCCTCTTGGCCAAATGGGCTTAA 1983 0.4982 MSKLQFYPYRILTISSLLILFQPLLVSSLCTCETQHKDQNASQAVTYKLVAIASILVSSAIGVCLPLLLKNVPSLRPEKAIYFLIKAFAAGVILATGFLHILPDAYDSLKSPCLSENPWGGFPFTGFIAMMAAILTLMMEAFATGYHRRSELRKAQPVNGDEESDGDHAGHVHGSAFVLERSNSSDLIRHRVVSQVLELGIVVHSVIIGISLGASESPKTIKPLVAALSFHQFFEGMGLGGCISQAKYKIKATIIMVLFFSLTTPTGIAVGLGISKIYDENSPTALIVQGVLNSASAGILIYMALVDLLATDFMNPKMQSNVRLQLGAYATLLLGAASMSVLAKWEEQSSRTGATRYKLAAIFSILAASLIGVALPTLGKKIPALRPENDVFFAVKAFAAGVILATGFIHVLPDAFESLTSPCLGESPWGSFPFSGFVAMLSAIGTMMMDAFATGFYQRLQRSKAQPVKEDEEMQCENQDQVHGHPHGSGFVSGELGSPELARHRVIAQVLELGIVVHSVIIGISLGASESPKTIKPLVAALSFHQFFEGMGLGGCISQAKFKSKAVAVMVVFFSLTTPVGIAVGMGISNIYDENSPKALVVEGVFNSASAGILIYMALVDLVAADFMSPRMQTNFKLQIAANILLLLGTACMSLLAKWA* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0116 660 Pfam ZIP Zinc transporter 357 657 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vvi1g0116 660 Pfam ZIP Zinc transporter 46 343 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vvi1g0116 660 PANTHER ZINC/IRON TRANSPORTER 44 340 - -
Vvi1g0116 660 NCBIfam ZIP zinc/iron transport family 349 660 IPR004698 GO:0005385|GO:0016020|GO:0071577
Vvi1g0116 660 NCBIfam ZIP zinc/iron transport family 30 345 IPR004698 GO:0005385|GO:0016020|GO:0071577
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0116 Vvi-Chr1 1086726 1093016 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0116 348 660 Inorganic Solute Cotransporters AT3G12750 58.750 3.59e-123 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0116 K14709 - vvi:109121469 646.351