Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0108 ATGGGTTGTCCAACTGCACTTAGAAAGGGGTGTTGGACACAAGAAGAAGACAGCTTACTCAGGAAATATGTTAAGGAGTTTGGAGAAGAGAACTGGAAGCACATCGCTGCAAAATCAGGGCTTCGCCGGTGTCGCAAGAGTTGCAGGTTAAGATGGTTGAATTATCTTCGACCTAATATCAAGCGCGGCAACTTTGGGGCTGATGAGGATGATCTGATCATGAGACTACATCGACTCTTGGGCAACAGATGGAGTATGATTGCAGGAAGGATTCCAGGGAGAACACCAAATGAAATAAAGAACTACTGGAAATCTTACTTGAGCAAGAAGATAGCATCAGAGACAAACAAAAATTCAGTACCAGTGAAGCATAGGACTCAGAGCTCAGCCATGGATGCTGAGAGAATGGGATCAGCTTCAGAGCGAAAACAAGGAAAAGAGGAAGAGGAAGATACTGTAGCATTCTGGAGGAGACTGCTGTCAGAGGCAGAATACAAGGAAAAGTTTGTTTGGCAGTGA 519 0.447 MGCPTALRKGCWTQEEDSLLRKYVKEFGEENWKHIAAKSGLRRCRKSCRLRWLNYLRPNIKRGNFGADEDDLIMRLHRLLGNRWSMIAGRIPGRTPNEIKNYWKSYLSKKIASETNKNSVPVKHRTQSSAMDAERMGSASERKQGKEEEEDTVAFWRRLLSEAEYKEKFVWQ* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0108 172 MobiDBLite consensus disorder prediction 116 151 - -
Vvi1g0108 172 FunFam Myb transcription factor 9 61 - -
Vvi1g0108 172 SMART sant 61 109 IPR001005 -
Vvi1g0108 172 SMART sant 8 58 IPR001005 -
Vvi1g0108 172 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Vvi1g0108 172 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Vvi1g0108 172 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Vvi1g0108 172 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Vvi1g0108 172 MobiDBLite consensus disorder prediction 136 151 - -
Vvi1g0108 172 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Vvi1g0108 172 CDD SANT 64 107 IPR001005 -
Vvi1g0108 172 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 60 IPR017930 -
Vvi1g0108 172 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Vvi1g0108 172 MobiDBLite consensus disorder prediction 116 134 - -
Vvi1g0108 172 Gene3D - 64 152 - -
Vvi1g0108 172 CDD SANT 12 56 IPR001005 -
Vvi1g0108 172 FunFam - 64 133 - -
Vvi1g0108 172 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 143 - -
Vvi1g0108 172 Gene3D - 4 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0108 Vvi-Chr1 1030308 1032146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0108 4 142 MYB Transcription Factor Family AT1G66370 52.518 1.42e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi1g0108 Myb_DNA-binding 8.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0108 K09422 - vvi:100260989 361.688