Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0091 ATGCAGGCACGACTGCCTATCACAAGCCAACCCTCATCATACAAGATCAATCTCTATACTCATGGCAAAATAAGTGACAGTCTCATCAAGCAACCGACCAATCCTCATATCGTAAACCATCCAAAGATCATAAGCTATCCCTCGCCATGCAAGAACAACCCTGGGCTCAAACTCCTCACACTCTACTTGGTCGGATCAGAGAGGGGATGTGCAAAGCTAGAAAAGCCGAGGATGGAAAGAATTGGTTCTTATGTCCTCTTTGCTATACTTCAACCAGCAGATGACCAATGTGGCACTCATAACCGTAGCCAAGAACTGCCCAATTTTACACGCTTCAGGTTGTGCATTCTGGACCCTACACAAACTGACCCATTAACATGCTCGCCACCACCTACATATTTTCTTAATCGTCAAACAGCAAGCAAAGCTGTCCTCAAGCCGCCGGCGGCGAAACGCCTCCGCCATCATCAAAGCACCAGTCCAACCATACCCAAATTTCTTTCTTTGTTGCTTCCTGATGTAAAAGCTCCTCCATCCATGCATCTTATGAAGGCTGCTCACCTTGTTGACAACACCAACCACCAGGGCCACTTCCAAAAGGTGTTGACTGCCATTGGGAACTTCTGTATATACTCCATTGCGTTTGGCATAATAGTAGAAATAGTGGTGATGTACCCAATTCAGAGATGCAAGTACAGGGATGGGATCAATAATCTTTTGGTGTTTCTCATTGGAGGAATACCAATAGCCATGCCAACAGTGTTGTCAGTGACAATGGCCATAGGCTCTCACCGTCTGTCAAAGCAAGGTGCTATCACAAAGAGGATGACAGCAATAGAAAAGATGGCTGGAATGGATGTTCTTTGCAGTGACAAGACTGGGACTCTCACCTTCAACAAGCTTATAGTGGACAAAAGCATGATTGAGATATTTTCAAAGGACGTGGACAGTGATGTGGTGATTCTGCTTGCGGCTAGGGCTTCCCGGGTTGAGAATCAGGATGCCATTGATGCCTGCATTGTGAGAATGTTGGCTAACCCCAAGAGGAAAATTGTTCTCAGGGCCACCCACTTCTCTCACTCGGGCATCAAGAAGCTCTCTCCTGAAGTTGCCCTCCAGACGGGAGAATCCAAAGGCCCTATTTTCCTCTGCCACTCTCAATCCTCGCAGGGCTCCTACGCCAAGCTTCCAAGCAACATCAAGGTGAAGAGAAAGAGCATGAACCCAGATCTAGCTGGAGGGATGGCAGACAGGGCTGAAAGATATGATAACCGATTCAACGTGTGGATTCAAGAAGTTCGCACAGAAGCTTATGCCATTGAGGATGTTCTTGACCTGTTCAGACTCCACTGGGATCAAGAATCAGTGTGGCGCCACTTGAAAATGTGGCACTCCATTAGCAACCTGATACAGGATATTAACACAAGGCTCGCGATCATTAGTGCGGAAACCAACACATACCTTAATGTGAGAGTAGTTCCTTTGATCCCTGGCAGGGGCAACAACACTGTGGGCATTGACAAGCCTAAAAGGAAGCTGGTTTCTTGGGCATTGGAGTCGAATCAGAAACTCAAGGTTATGTTCATGGTGGGAATGGCTGGCTTGGGAAAGACAACGCTTGGCCACAGCGTGTACGAGGAGGTGAAGATGTGTGGGAATCCATTAGACTTGCCTTGCCAGATGGTAACGACAATAGAATAA 1701 0.4715 MQARLPITSQPSSYKINLYTHGKISDSLIKQPTNPHIVNHPKIISYPSPCKNNPGLKLLTLYLVGSERGCAKLEKPRMERIGSYVLFAILQPADDQCGTHNRSQELPNFTRFRLCILDPTQTDPLTCSPPPTYFLNRQTASKAVLKPPAAKRLRHHQSTSPTIPKFLSLLLPDVKAPPSMHLMKAAHLVDNTNHQGHFQKVLTAIGNFCIYSIAFGIIVEIVVMYPIQRCKYRDGINNLLVFLIGGIPIAMPTVLSVTMAIGSHRLSKQGAITKRMTAIEKMAGMDVLCSDKTGTLTFNKLIVDKSMIEIFSKDVDSDVVILLAARASRVENQDAIDACIVRMLANPKRKIVLRATHFSHSGIKKLSPEVALQTGESKGPIFLCHSQSSQGSYAKLPSNIKVKRKSMNPDLAGGMADRAERYDNRFNVWIQEVRTEAYAIEDVLDLFRLHWDQESVWRHLKMWHSISNLIQDINTRLAIISAETNTYLNVRVVPLIPGRGNNTVGIDKPKRKLVSWALESNQKLKVMFMVGMAGLGKTTLGHSVYEEVKMCGNPLDLPCQMVTTIE* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0091 566 NCBIfam HAD-IC family P-type ATPase 180 318 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi1g0091 566 Gene3D - 400 480 - -
Vvi1g0091 566 ProSitePatterns E1-E2 ATPases phosphorylation site. 291 297 IPR018303 -
Vvi1g0091 566 Gene3D - 286 300 IPR023214 -
Vvi1g0091 566 FunFam - 301 364 - -
Vvi1g0091 566 Pfam NB-ARC domain 509 553 IPR002182 GO:0043531
Vvi1g0091 566 Gene3D - 482 559 IPR027417 -
Vvi1g0091 566 Gene3D - 193 285 - -
Vvi1g0091 566 Pfam E1-E2 ATPase 181 269 - -
Vvi1g0091 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 549 IPR027417 -
Vvi1g0091 566 Gene3D - 301 350 IPR023299 GO:0000166
Vvi1g0091 566 PANTHER CALCIUM-TRANSPORTING ATPASE 184 350 - -
Vvi1g0091 566 SUPERFAMILY Calcium ATPase, transmembrane domain M 189 283 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0091 Vvi-Chr1 910536 918250 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0091 184 349 Primary Pumps ATPases AT1G80660 80.723 7.47e-85 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0091 K01535 - vvi:100249749 297.745