Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0082 ATGGACCCAGAAATAGGTGGAGGGATTGCAGGTAGTGCTGTGAGCTTTCTTCTTCTCAAACTTGATGTTTTTGCAAGTAGAGAGTGGAATTTGCAGGAAAATATAAAAAAGGCAGTCCAGAATTTAGGACGCGAGCTGCGGAGCATTGAAGCCCTACTGAGAGATGCTGCTTCAAAGAAAGAGCATGATCACCAATTCAGGGTCTGGATTCAAAATGTCCGCGATCAAGCTTATGCCATCGAGGATGTTCTTGACCTGTTCAGGCTCGATCAAGAATCAGTGTGGCGCCGCCTGAAAATGCGTCACTCCATCAACAACTTGATACAGGATATTGACCGGAGTCTCCAAAGCATTCAGCAGACAAAGGAGAGGTATCACAGCATGGCCTCCACTTCAACCAATGCTGGCAACAACACAGACCTTCCTGTGAGAGTGGCTCCTCAGTTCATTGGCAACGTTGATACTGTGGGCCTTGAGGAGCCTACAAATAAGCTGGTTTCTTGGGCCTTGGAACCGAAACAAAGGCTTGAGGTGATGTTTGTGGTGGGGATGGCTGGACTGGGGAAGACAACTCTTGTCCACAGCGTGTATGAGAGGGTGAAGCAGCACTTCGGTTGCAATGTTTGGATCACTGCTTCAAAGTCCAAAACAAAACTCAATATCTTGACCTTGTTAGTAGAGAACTTGGGCTGTACAATCACACAGGGGGCCGATGTGGTTGCTCTGATGCATAAACTGCGAAAATTTCTCCACAACAAACGGTATGTTATAGTTCTTGATGACTTATGGGTAAAAGATGTGTGGGAGTCCATTAGACTTGCCTTGCCAGATGGTAAGAACAGTAGAATAATTGTCACTACAAGGAGAGGCGATATAGCTAATTCTTGTAGAGATGATGATTCTATTGATATCCACAAGCTTCAGCCACTGTCACCGCAAAGGGCTGAGCAACTCTTCTATAAGAAAGCTTTCTCAAGAAATGGCAGATGTCCTTCAGGTTTGGAGGAAGTCTCCAAATCCATCTTACAGAAATGTGATGGATTACCACTTGGGATTATTGAAATCGGTAGATTTTTGTCAAGACGGACTCCAACTAAAAATGAATGGAAAATATTACATGATAGTCTTGAGTCTGGATTGAGAAGCAGTGGTGAGCTTTCGGATATTATGAAAGTGTTGTCTGCAAGTTACAATGATTTACCTTACCATCTCAAGTATTGTTTCTTGTACATGAGCATTTTTCCTGAGAATAACCTAGTTAAGCGAAGAAGACTAATTCGGCTATGGATAGCTGAAGGGTTTGTAATAGAGAAACGAGGCAAGACGCTTGAAGAGGTTGGGGAAGAGTACCTGAACGAGCTGATAGACAGGAGTCTAATAAAGGCAAATGAAATGGATTTTGATGGAAGGCCGACAAGTGTGGGAGTTCATAGTCTCATGCTGAAGATGATTCTCTCAGTCTCACATGAGGAGAACTTTTGTACTGTCTGCACAGGAGCTGCAAGAAACTTGACTCAGAACACCCGGCGCCTATCTATCCAGAAGGAAGATTTTGATGTGTCTCAGGACTTACCCTGTGTTCGAACCTTCTTCAGTTTCGGCATAGGCAAAGTAAAGATTGGTTCCAATTTCAAACTATTGAAGGTCTTGGACATACAGGGCACTCCTTTGGAAGAATTTCCGAGTGTAATTACAGATCTTCTGCTCTTGAGGTACTTGAGTTTGAGGAATACAAATATAAGGAGCATCCCAAGGTCCCTTGGTGACCTTCATCACCTTGAGACCTTGGATCTTAAGCAGACTCTGGTAACAAAGGTACCCAAAGCAGTCCTACAATTGGAGAAACTTCGCCATCTGCTGGTTTATCGCTACAATATGGAAAGTGTCCTTCCTTTTGATATTGTTCAGGGGTTCAAGGCACCAAAGAGGATGGGCGCATTGAAGAACCTACAAAAGCTATCATTTGTAAAGGCGAGTGGGCAGCACAGAATGAGTCGGCAACACAGAATGATACAAGGGCTAGAAAATCTTACGCAGTTGAGGAAGCTGGGTATTGTAGAACTGGCAAAAGAAGATGGGACGCGCTTGTGCCATGCAATTGAGAAGATGCGAAATCTCCATTCCTTGAATGTGACATCTCTTAATATAGAGGTGCCTCTGGAGCTTGATGCAATGACCAATCCGCCGCCCCTTCTTCAACGCTTGTACCTCAAAGGGCCCTTGGAAAGGTTTCCACAGTGGGTATCTTCTCTACATGACCTGGTGAGAATACGCCTAAAATGGTCTTCACTCGCAGAAGACCCGATTGCAGCTCTTCAAAACCTCCCATATCTAGTGGAGCTGCAGCTGCTTGATGCATACACTGGAACCCAGTTGGACTTCAGGTCGGGAAAATTTCAGAAGCTTAAGATATTAGAACTTCAGCAATTGGAACAGCTGAAGTCTATCATAATGGAAGAAGGCACATTGCCTTGCCTACAAAAGCTGATCATAAGCCACTGCAGCAAGCTGGTGCAGGTCCCTAGAGGTATTGACAAGCTCATTCACCTCCAAATGCTGCTGCTGCACGATATGCCCGAACCATTTGTGACCAGGCTGAGGAAAAATGGCGGTCGATTGCGCCATTTGGTTCACCATATTCCGTGTATTCATTCATATAAACAGGGCCAGTTGGAAGATCTTTCATGA 2688 0.4464 MDPEIGGGIAGSAVSFLLLKLDVFASREWNLQENIKKAVQNLGRELRSIEALLRDAASKKEHDHQFRVWIQNVRDQAYAIEDVLDLFRLDQESVWRRLKMRHSINNLIQDIDRSLQSIQQTKERYHSMASTSTNAGNNTDLPVRVAPQFIGNVDTVGLEEPTNKLVSWALEPKQRLEVMFVVGMAGLGKTTLVHSVYERVKQHFGCNVWITASKSKTKLNILTLLVENLGCTITQGADVVALMHKLRKFLHNKRYVIVLDDLWVKDVWESIRLALPDGKNSRIIVTTRRGDIANSCRDDDSIDIHKLQPLSPQRAEQLFYKKAFSRNGRCPSGLEEVSKSILQKCDGLPLGIIEIGRFLSRRTPTKNEWKILHDSLESGLRSSGELSDIMKVLSASYNDLPYHLKYCFLYMSIFPENNLVKRRRLIRLWIAEGFVIEKRGKTLEEVGEEYLNELIDRSLIKANEMDFDGRPTSVGVHSLMLKMILSVSHEENFCTVCTGAARNLTQNTRRLSIQKEDFDVSQDLPCVRTFFSFGIGKVKIGSNFKLLKVLDIQGTPLEEFPSVITDLLLLRYLSLRNTNIRSIPRSLGDLHHLETLDLKQTLVTKVPKAVLQLEKLRHLLVYRYNMESVLPFDIVQGFKAPKRMGALKNLQKLSFVKASGQHRMSRQHRMIQGLENLTQLRKLGIVELAKEDGTRLCHAIEKMRNLHSLNVTSLNIEVPLELDAMTNPPPLLQRLYLKGPLERFPQWVSSLHDLVRIRLKWSSLAEDPIAALQNLPYLVELQLLDAYTGTQLDFRSGKFQKLKILELQQLEQLKSIIMEEGTLPCLQKLIISHCSKLVQVPRGIDKLIHLQMLLLHDMPEPFVTRLRKNGGRLRHLVHHIPCIHSYKQGQLEDLS* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0082 895 Gene3D - 144 305 IPR027417 -
Vvi1g0082 895 FunFam Probable disease resistance protein At1g61300 140 301 - -
Vvi1g0082 895 FunFam Probable disease resistance protein At1g63360 397 486 - -
Vvi1g0082 895 Coils Coil 32 59 - -
Vvi1g0082 895 Gene3D - 310 396 IPR042197 -
Vvi1g0082 895 Coils Coil 104 124 - -
Vvi1g0082 895 PANTHER DISEASE RESISTANCE PROTEIN RP 39 834 IPR044974 GO:0006952
Vvi1g0082 895 CDD RX-CC_like 12 118 IPR038005 -
Vvi1g0082 895 Pfam NB-ARC domain 161 399 IPR002182 GO:0043531
Vvi1g0082 895 Gene3D - 397 486 IPR036388 -
Vvi1g0082 895 PRINTS Disease resistance protein signature 345 359 - -
Vvi1g0082 895 PRINTS Disease resistance protein signature 797 813 - -
Vvi1g0082 895 PRINTS Disease resistance protein signature 178 193 - -
Vvi1g0082 895 PRINTS Disease resistance protein signature 249 263 - -
Vvi1g0082 895 Pfam Rx N-terminal domain 13 92 IPR041118 -
Vvi1g0082 895 Gene3D - 12 126 - -
Vvi1g0082 895 Gene3D Ribonuclease Inhibitor 507 882 IPR032675 -
Vvi1g0082 895 SUPERFAMILY L domain-like 476 862 - -
Vvi1g0082 895 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 410 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0082 Vvi-Chr1 806983 809670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0082 173 372 WRKY Transcription Factor Family AT5G45050 30.583 1.53e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0082 K13457 - vvi:100257664 1750.72