Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0080 ATGAGCTCATTGGCATTCTCTCTTGGGTATTGCACTCCCATAAAGCTCAGAACATCGTCTGGTAGATTATTTGCAAGCAATGTCAACATAGTAGCTGAATCAAGAATCAAAATCTTAAGCCACCACCAAGAAAGCTCTTCTCCTCGACCACTGCAAATAAATGAAAACTCACCTTTGTTCGGGAGAAGAGAAGCAATTGGTTTTGGCTTCTGCTTCAGCATTCTTGATGTATTCTTGCAAGCACAACCCAGTGTAGCAGCCCAAACAGCTCCATGTGAACTAACAGTGGCTCCTTCTGGTCTAGCCTTCTGTGATAAAGTTGTGGGAACTGGCCCTGAGGCTGTCGAAGGACAGCTTATTAAGGCACATTATGTGGGGAAATTGGAAAGTGGGAAGGTCTTTGATAGCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCCATGCTTGCTGGTGGAAAACGCACATTAAAGCTCCCCCCAGAGCTCGGATATGGCACGAGAGGTGCTGGCTGTAGAGGAGGTTCATGTATCATACCTCCAGATTCGGTTCTCCTGTTTGATGTAGAGTTCATCGGCAAGGCTTGA 651 0.4716 MSSLAFSLGYCTPIKLRTSSGRLFASNVNIVAESRIKILSHHQESSSPRPLQINENSPLFGRREAIGFGFCFSILDVFLQAQPSVAAQTAPCELTVAPSGLAFCDKVVGTGPEAVEGQLIKAHYVGKLESGKVFDSSYDRGKPLTFRIGVGEVIRGWDQGILGGDGVPPMLAGGKRTLKLPPELGYGTRGAGCRGGSCIIPPDSVLLFDVEFIGKA* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0080 216 Gene3D - 88 216 IPR046357 GO:0003755
Vvi1g0080 216 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 112 213 IPR001179 GO:0003755
Vvi1g0080 216 SUPERFAMILY FKBP-like 94 213 - -
Vvi1g0080 216 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 4, CHLOROPLASTIC 88 215 IPR044183 GO:0009507
Vvi1g0080 216 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 117 216 IPR001179 GO:0003755
Vvi1g0080 216 FunFam Peptidylprolyl isomerase 89 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0080 Vvi-Chr1 793797 796288 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0080 93 214 Calmodulin-binding Proteins AT5G48570 39.370 5.44e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0080 K01802 - vvi:100262788 429.098