LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g0079	ATGCCCGTAACTCCCTCACGCCTTCTGAAACCCATAAACCTTCCAGTTTCTTCGCTAATCAGAAGCTTTAATTCATGGTCTTCACCTTCAGCCTCCATAAGAAACGCTTCTTCTTCTTCTTCTCCTTACAAAGTCTTACAAGTGTACTCTCAGCTCCACCGCCAATCTCGACCTTTTGACAGCTTCTCCATACTCTTCACCATCAAGTCCTGCGCCCATTTGCGGAACCTCCCACTCTTTGGACACCTCCACGCCCATCTTCTCAAACTGGGCTTCAATTCCCATGTCTACGTCGCCACTTGTCTTCTCCATACGTATTCTCTCGCTTCGTTGCATGACGCCTGTGTCCTGTTCGATGAAATGCCTCATAAAAACACCGTTACCTGGAACACCATGATCACGGCCTATTCGAAATCTGGGGACGTTAAGAAGGCGCGTCTCGTGTTTGAGCAAATGCCCTTGAGGGACCTCGCTTCGTGGTCTGCCATGGTCGCTGGGTACATGTATGGTGGCGAGTGGCATAGTGGGTTGGCGCTTTTTCGAGAGATGGTGGTGAATGAGGGGCTGAGACCTGATAAAGTGACACTGGGGTCGGTTTTATCGGGCTGCGCCCGGATGGGTTCGCTTGGGTTGTTGGTGGGGAGGTCAATTCATGGTTTCACGGCGAAGAATGGGTGGGAGTTGAGTGTGGACCTTGGTACGGTTTTGGTGGACATGTACGCCAAGTGTGGATTTCTTAAGAGTGCTTTCCGGGTTTTTGATTTGATGCAGGAAAAGAATGTGGCGTCTTGGACTGCATTGATTTGTGGTTCTGCTCAACATGGATATGGGAAAGAAGCCTTGTCCATGTTTGAGCTGATGCAAGATATGGGCGTGAAACCCAATGAGATGACTTTCACCGGGATTCTCAGTGCTTGTGCACAAGCAGGATTAGTTGAGGAAGGCCGCAAGTATTTCAACAAGATTGAGGAGTATGGGTTGGAGCCAAGAATTCAACATTTTGGCTGCATGGTTGATTTGTTTGGTAAGGCAGGGCTTTTAGAGGAAGCTTATGAAATTATTAATTCAATGAAACTTGAGCCCAATGTTGTTTTGTGGAGCTCATTTTTGTCATCTTGTAAAGTGCACAAGCAGTTTGAGCTGGCAGAGAGAGTGACTGAGCAGGTTTTAAGGACAGTAAAGCCGGAGAACGATGGAGGGGTTTATACCCTTATTTCCAATTTATTTGTTCTGAATGATAAGTGGGATGATGCAGAGAGAGTGAGGAAATTAATGGTCAATCAAAAAGTGAGGAAGGCAAGAGGATCTAGTTTCATCAGAAGTGGATCTGTCTAG	1335	0.4704	MPVTPSRLLKPINLPVSSLIRSFNSWSSPSASIRNASSSSSPYKVLQVYSQLHRQSRPFDSFSILFTIKSCAHLRNLPLFGHLHAHLLKLGFNSHVYVATCLLHTYSLASLHDACVLFDEMPHKNTVTWNTMITAYSKSGDVKKARLVFEQMPLRDLASWSAMVAGYMYGGEWHSGLALFREMVVNEGLRPDKVTLGSVLSGCARMGSLGLLVGRSIHGFTAKNGWELSVDLGTVLVDMYAKCGFLKSAFRVFDLMQEKNVASWTALICGSAQHGYGKEALSMFELMQDMGVKPNEMTFTGILSACAQAGLVEEGRKYFNKIEEYGLEPRIQHFGCMVDLFGKAGLLEEAYEIINSMKLEPNVVLWSSFLSSCKVHKQFELAERVTEQVLRTVKPENDGGVYTLISNLFVLNDKWDDAERVRKLMVNQKVRKARGSSFIRSGSV*	445

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g0079	444	FunFam	Pentatricopeptide repeat-containing protein, mitochondrial isoform A	41	223	-	-
	Vvi1g0079	444	Gene3D	Tetratricopeptide repeat domain	233	444	IPR011990	GO:0005515
	Vvi1g0079	444	Gene3D	Tetratricopeptide repeat domain	30	214	IPR011990	GO:0005515
	Vvi1g0079	444	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	125	159	IPR002885	-
	Vvi1g0079	444	FunFam	Pentatricopeptide repeat-containing protein	259	443	-	-
	Vvi1g0079	444	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	260	294	IPR002885	-
	Vvi1g0079	444	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	30	440	IPR046960	GO:0003723\|GO:0009451
	Vvi1g0079	444	Pfam	PPR repeat	127	154	IPR002885	-
	Vvi1g0079	444	Pfam	PPR repeat	334	358	IPR002885	-
	Vvi1g0079	444	Pfam	PPR repeat	159	185	IPR002885	-
	Vvi1g0079	444	Pfam	PPR repeat family	259	307	IPR002885	-
	Vvi1g0079	444	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	295	329	IPR002885	-
	Vvi1g0079	444	Pfam	E motif	376	439	IPR046848	-
	Vvi1g0079	444	NCBIfam	pentatricopeptide repeat	263	296	IPR002885	-
	Vvi1g0079	444	NCBIfam	pentatricopeptide repeat	159	192	IPR002885	-
	Vvi1g0079	444	NCBIfam	pentatricopeptide repeat	234	261	IPR002885	-
	Vvi1g0079	444	NCBIfam	pentatricopeptide repeat	127	154	IPR002885	-
	Vvi1g0079	444	NCBIfam	pentatricopeptide repeat	298	329	IPR002885	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g0079	Vvi-Chr1	791377	792711	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g0079	125	442	Glycoside Hydrolase	AT3G49170	35.110	3.94e-63	217

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi1g0079	-		-	vvi:100267935	876.315