Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0078 ATGATTGAATCTGTGGGGATTCTTGAAGGAGAGGTGATAAGAAGATGTGGGTCTGAGGTACTTTTAAAAGATGATAGAGGGGTAATAAGGATGCTGATTTCCATATACAATGCAGGTATGGGAACAAAGGTGCAGTGTAAAAGCTATTTGCCAGGATATTACTCCATGAGGGATCTTAATGAGGATTCTAACAGTGGTGGCTGGCCCCTTTATTATGGAGATAAAACATTGACAAATGGGCAATATTACAATGGGTTCCTGCCAAGGGCCATTGCAGATGCATATACTGGGTATGATAAGGATGTACTAAAGCAAACAATGCTTGAGCATGAGGCCATATTCAAAGATCAGGTCCATGAGCTCCACCGCCTTTACAGAAAACAAAGAAACTTGATGGATGAAATTAAAAGAAAGGAACTGCATAAGCAGAGGGTACCTGTTGAGACATCATTGTCATCAAGCCCCTTATCATCTCAAATGCCATCTGAAGAAGCTCGAAAATGGCATATCCCTGGCTTCCCATTGATAAATTCTGTTTGTGCTAGTCCATCTGTTTCAGGCACTGAGAACAGTCATCACCCTTTGAGTTTTATAAAAGGGAACAGTTCACCAGCTGGTCCTGTTCAATTCCAAAACGGAGGTTGTTCAAAGGATTGTGAGGTGCTGGAGTCCAGGCCCACAAAGCTTAGGAGAAAAATGTTCAATCTTCAACTTCCTGCTGATGAATACATCGATACTGAAGAAGGGGAACAGTTTGGTAACAATAAAGTGCCTGATGATTATCCTCCTAATGAAAATTGTAAGATTGCTCCAGAAAGTGGGATAAAGCTGTTTCTTGGCAGTGATAGGAAGACTTGTCGACAAGAAGATGTTTCGAAATCTAATTTTTGTTTAAGGAGCACAAATGCGTTGGCTGACCTGAATGAGCCTGTTCAGGCTGAAGAAGCAAAAGATCCTGCTTCTGTTGATTTTCTAGGCCGTCCCACCTGCCATGGGGAAACTCAAGATCAGGAACTGTCTGCTAAGCCCAAGTCAGAGTTTCTAGATTTTCCAAAGGGAAGTTTACAGAACTCCCATCATGGAAGTGACAATGGGACTTTGAACAATCTATATGGGCAGAGCAAAGGAAATGGGAGGGAGTGGTTGCCCTATATGCTGGAAGCAGGGCACGGTAAAAGTAACCCAAAATCTAATTCACAAGGTCTCCAACCAGAAAAGTTGCCTAGACCTTCCCAGCCAGGACAAGTTATGCTTAACAAGGCCCATGAGCCTCCAGCATTTCTTCTCACTGATCAAAACAAGGGAGATATGTGGAGGGAAAGGACATCGTCTGGTTTAGAAATCTCTGAGAAAAGTCAAGGTCTCTCAAATTATAACCATGCAGAACAGGCTGTCTCTTCTCATTTGCCCAGTCAATGTCAATTTGTCTTTTCCTCTGATTTGGCCAAGTCTTGGTCTCATTCAGTTTCATCGTGGGAAAAGATGAGCAGTGGCCTCAGTCAGAAGTCAATGTCAATTCAAACACAGCCGTTTTTAACTTCACCCACTACCCTGAGTAAGAGTTTGCAGTCATCAGCCCAGAGTCATGGGATTTTTGGACACAAGTGGCATCTTGACAGCAATTCCAGGTCAAACCCTGGTTTTGGAAGTGAAGTAGCTAACCGAAATGGATTTTACCATGGGTCCTCATCTGGGTCCAAGGAACTACCAATTGGTTTTACATCAATTGGCTTTGACTATTTGAACTGCACTAATGGTGATAGTGCAGTCTCTGGACACTTAATTGAAGGTTCTGCAAAGTACTCCAAGGGTTCCAATTGCATGGATGTGAAGTCTGCAAAAGATATGAACTTGAATATGGTGCTTTCAAACAGTTCATCCAATGATGCAGTTCCCCGGCAAGGTCTTGAAATCATAGATGGGGAAAAGAAGCATGAAGACTACATGCCAGCACTGCCTTGGCTCAGAGCTAAAGCTTGTAAGAATGAGGCCTCCAATGTGTGTGGTGGTTCAGACAAGATGGAATCAAGTTTTTTTCAGTCTTCTCTTAGTCTGTTGTGTGACAAAAATAAAGCTGAAAAGGGTCCTAGTCAAAATCTGTCTCAGAATGTTACATCAGCTGCCTATGCCTGTGATGTTGAGGCCAAGGAGATTGAGATAAGTGACTGCCCAAGGAATAGAAAAATTCTTGGCTTTCCTGTTTTTGAGAAGCCTCATGTTTCTAACAATGAGTCTTATTCGCTTACCTCCCCCTCTGCATCCCTTCTTTACTCATCTGAAGGTCAGGACATTGAAAATAATTGGAAAAACAGAGCACTTGATATTAACTTGCCTTGTGATCTTGCAGTTCCTGACTTGGGCAAGCAGACTCCTGCAGAAGTTCTGATTATAGAGAAGGGAGCACATTCTAATGTTGCCTGTGTTAGAAGTCACATCGATTTGAATTCTTGTATAACTGAGGATGATGCTTCAATGACTCCTGTTCCAAGCACCAATGTGAAGATTGCTTTGGAGATAGATCTGGAAGCCCCTGTAGTTCCTGAAACCGAGGAAGATGTTCTTTCTGGGTTGGAATCTATAGGAAAGCAGCATGATTCACCTGTACAATCACTGCCACACAAAGATGATGGCCTTCTGGATGAATTTGCCAGAATAGCAGCAGAAGCAATTGTTGCCATCTCATCATCTGGCAACTGCAGTGACCTGGAGAGCCCCACTCACTACCTCTCGGAAGCTCCTTTGAAGGACTCCTCCCTCCACTGGTTTGTGGAGGTAATTTCTTCTTGTGCAGATGATCTTGATAGCAAGTTCGGTTCAGTTTTGAGGGGCAAAGATTATGTAGATAATGAGGAACCCGGTGGAATTGATTATTTTGAGGCAATGACATTGAAATTGATAGAGACCAATGTAGATGAATACTTGCCTGAGCCTGTAGTTCCAGAAAACTCAAAAGTGGAAGAAACTGGAACTGCTTTAGTGCCAAATCGAACCCGAAAGGGGCAAGCTAGGAGAGGGAGGCAGAGGAGGGACTTTCAAAGGGACATCCTTCCTGGCCTTGCTTCTCTTTCAAGACACGAGGTCACAGAAGATCTTCAGACATTTGGGGGGTTGATGAGAGCCACTGGACACCCTTGGCATTCAGGATTGGCTAGAAGAAACGGCACTAGAAATGGGGGCGCAAGGGGCAGGCGGAGGTCAGTGGTCAGCCCCAACACCGAGGTGGCCATTACCACAGACGTGGCCATTACCACAGTGTGCAGTCCATTGGTGCAGCAGCTTACTAATATTGAAATGGGACTGGAGGATAGAAGCCTAACAGGGTGGGGGAAGACCACTAGACGGCCCCGTCGTCAAAGATGCCCTACAGGTAACCTTCCACCCCCTTTAACTTAA 3393 0.4421 MIESVGILEGEVIRRCGSEVLLKDDRGVIRMLISIYNAGMGTKVQCKSYLPGYYSMRDLNEDSNSGGWPLYYGDKTLTNGQYYNGFLPRAIADAYTGYDKDVLKQTMLEHEAIFKDQVHELHRLYRKQRNLMDEIKRKELHKQRVPVETSLSSSPLSSQMPSEEARKWHIPGFPLINSVCASPSVSGTENSHHPLSFIKGNSSPAGPVQFQNGGCSKDCEVLESRPTKLRRKMFNLQLPADEYIDTEEGEQFGNNKVPDDYPPNENCKIAPESGIKLFLGSDRKTCRQEDVSKSNFCLRSTNALADLNEPVQAEEAKDPASVDFLGRPTCHGETQDQELSAKPKSEFLDFPKGSLQNSHHGSDNGTLNNLYGQSKGNGREWLPYMLEAGHGKSNPKSNSQGLQPEKLPRPSQPGQVMLNKAHEPPAFLLTDQNKGDMWRERTSSGLEISEKSQGLSNYNHAEQAVSSHLPSQCQFVFSSDLAKSWSHSVSSWEKMSSGLSQKSMSIQTQPFLTSPTTLSKSLQSSAQSHGIFGHKWHLDSNSRSNPGFGSEVANRNGFYHGSSSGSKELPIGFTSIGFDYLNCTNGDSAVSGHLIEGSAKYSKGSNCMDVKSAKDMNLNMVLSNSSSNDAVPRQGLEIIDGEKKHEDYMPALPWLRAKACKNEASNVCGGSDKMESSFFQSSLSLLCDKNKAEKGPSQNLSQNVTSAAYACDVEAKEIEISDCPRNRKILGFPVFEKPHVSNNESYSLTSPSASLLYSSEGQDIENNWKNRALDINLPCDLAVPDLGKQTPAEVLIIEKGAHSNVACVRSHIDLNSCITEDDASMTPVPSTNVKIALEIDLEAPVVPETEEDVLSGLESIGKQHDSPVQSLPHKDDGLLDEFARIAAEAIVAISSSGNCSDLESPTHYLSEAPLKDSSLHWFVEVISSCADDLDSKFGSVLRGKDYVDNEEPGGIDYFEAMTLKLIETNVDEYLPEPVVPENSKVEETGTALVPNRTRKGQARRGRQRRDFQRDILPGLASLSRHEVTEDLQTFGGLMRATGHPWHSGLARRNGTRNGGARGRRRSVVSPNTEVAITTDVAITTVCSPLVQQLTNIEMGLEDRSLTGWGKTTRRPRRQRCPTGNLPPPLT* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0078 1130 MobiDBLite consensus disorder prediction 1106 1130 - -
Vvi1g0078 1130 MobiDBLite consensus disorder prediction 146 161 - -
Vvi1g0078 1130 MobiDBLite consensus disorder prediction 1045 1066 - -
Vvi1g0078 1130 PANTHER TRANSCRIPTION FACTOR, PUTATIVE (DUF863)-RELATED 44 1121 - -
Vvi1g0078 1130 Pfam Plant protein of unknown function (DUF863) 180 1121 IPR008581 -
Vvi1g0078 1130 MobiDBLite consensus disorder prediction 312 374 - -
Vvi1g0078 1130 Coils Coil 118 138 - -
Vvi1g0078 1130 MobiDBLite consensus disorder prediction 143 163 - -
Vvi1g0078 1130 MobiDBLite consensus disorder prediction 387 416 - -
Vvi1g0078 1130 MobiDBLite consensus disorder prediction 392 406 - -
Vvi1g0078 1130 MobiDBLite consensus disorder prediction 351 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0078 Vvi-Chr1 770275 779095 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0078 - - vvi:104879181 2211.42