Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0071 ATGTTATCGGAAGCTGATCCATCAGTAAGTGGAATAAACAGCGTTGATGAAGAAGGTTGGGCGCCACTCCACTCTGCTGCAAGCAGTGGGCATACAGAAATTGTGGAGATTTTGATTAGCAGAGGGGCTGATGTTAATTTGAAAAATGATGGAGGTCGCACTGCTCTTCACTATGCTGCCAGCAAAGGATGGTTGAAAATTGCTGAATTTCTGATTTTACACAATGCAAAGATTAATGCCAAGGATAAGATCGGTTGCACCCCATTGCATCGAGCAGCAAGCACAGGGAACTCAGCAATGTGTGAACTCTTAATTGAGGAAGGAGCAGAAGTTGATGCTATTGATAAAGCTGGTCAAACTCCTCTTATGAATGCAGTAATATGCCAAAACAAAGAGGTGGCTCTCCTTCTGATAAGACATGGTGCAGATGTGGATGTAGAAGACAAGGAAGGATACACTGTACTTGGACGAACTTCAGATGATTTTAGACCAATACTGGTAGATGCTGCGAAGGCCATGCTTGAAGGATGA 531 0.435 MLSEADPSVSGINSVDEEGWAPLHSAASSGHTEIVEILISRGADVNLKNDGGRTALHYAASKGWLKIAEFLILHNAKINAKDKIGCTPLHRAASTGNSAMCELLIEEGAEVDAIDKAGQTPLMNAVICQNKEVALLLIRHGADVDVEDKEGYTVLGRTSDDFRPILVDAAKAMLEG* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0071 176 SUPERFAMILY Ankyrin repeat 12 155 IPR036770 -
Vvi1g0071 176 PRINTS Ankyrin repeat signature 19 34 IPR002110 GO:0005515
Vvi1g0071 176 PRINTS Ankyrin repeat signature 133 147 IPR002110 GO:0005515
Vvi1g0071 176 ProSiteProfiles Ankyrin repeat region circular profile. 18 50 - -
Vvi1g0071 176 ProSiteProfiles Ankyrin repeat profile. 117 149 IPR002110 GO:0005515
Vvi1g0071 176 ProSiteProfiles Ankyrin repeat region circular profile. 84 116 - -
Vvi1g0071 176 PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60 13 97 IPR039323 -
Vvi1g0071 176 ProSiteProfiles Ankyrin repeat profile. 51 83 IPR002110 GO:0005515
Vvi1g0071 176 ProSiteProfiles Ankyrin repeat profile. 84 116 IPR002110 GO:0005515
Vvi1g0071 176 ProSiteProfiles Ankyrin repeat region circular profile. 117 149 - -
Vvi1g0071 176 Gene3D - 2 55 IPR036770 -
Vvi1g0071 176 SMART ANK_2a 117 146 IPR002110 GO:0005515
Vvi1g0071 176 SMART ANK_2a 84 113 IPR002110 GO:0005515
Vvi1g0071 176 SMART ANK_2a 51 80 IPR002110 GO:0005515
Vvi1g0071 176 SMART ANK_2a 18 47 IPR002110 GO:0005515
Vvi1g0071 176 ProSiteProfiles Ankyrin repeat region circular profile. 51 83 - -
Vvi1g0071 176 Pfam Ankyrin repeats (3 copies) 13 82 IPR002110 GO:0005515
Vvi1g0071 176 Pfam Ankyrin repeats (3 copies) 85 148 IPR002110 GO:0005515
Vvi1g0071 176 ProSiteProfiles Ankyrin repeat profile. 18 50 IPR002110 GO:0005515
Vvi1g0071 176 Gene3D - 56 175 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0071 12 89 Acyl Lipid Metabolism Gene Families AT5G53470 42.308 1.54e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0071 K06694 - vri:117921498 345.895