Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0068 ATGCCGATGGGGGTGAAGGGAACAATGGTGGGTGTTCTTCTATTTTGTGCCTGGTTTTTTGAGGGATTTGCAGAAGATGTGAAAGTAACGGTTGGAGGAGTGACTTCGATAGCTGAAACAGATGATAATTTCATCTGTGCCACCATTGATTGGTGGCCTGCTGATAAGTGTGATTACAATCAATGTCCATGGGGATTAGCTGGCATCTTCAATCTGGATTTGCAGAACATCATTCTTGTGAATGCTATCAAAGCATTTGATAATCTGAGAATCAGAATGGGAGGCTCACTACAAGATCAGATACTCTACCAAATTGGATATGCCATTCATGACTGCCCACAAATAAAAAAGGTTGAGGGTGGTCTGTTTGGATTCTCAGAAGGTTGTCTCACCATGCAGAAATGGGATGAAGTCAATAAACTCATCAACCAAACTGGAGCTTTGTTTACTTTTGGATTGAATGCCCTGATCGGGAAGAACAAGCCGGAGCCGCCTCCCAAAGGTGACAATATCACTTGGACTGGTGATTGGGACTCGCAAAATGCCCGCGACCTGATCGAGTACACTCTGTCAAAAGGGTACAAGATCGATTCATACGAACTAGGAAACGAGCTGTGTGGATCTGGGGTTTCCGCAAGGCTTGATGCTAAGCAGTATGCAAAGGACCTGGTGAAACTAAGACAAACGGTGAAAGACGTTTACCAAAAGGCAAGGCCAATGCCCAAGATCATGGGGCCAGCTGGCTTTTATGATAAGGAGTGGTTCGACACCTTCCTGGAGGCTGCAGGGCCACATGCTGTCGATGGATTGAGTCACCATACTTACAACCTTGGCCCAGGGGTTGATCCCACCCTCATCAACAAGGTTCAGGACCCGTACTTCCTCTCCCAAATAGCTCAGACGTATAAGGATATCTCGGACAGCATCAGGCTGTTTGGGCCATGGGCATCTGCATGGATTGGAGAAGCTGGTGGGGCTTACAACAGCGGTGGCAAAGATGTCTCCCACACCTTTGCCAATGGCTTCTGGTACTTGGATCAACTGGGCATGTCAGCAAGCTTCAACCACAAGGTCTTCTGCAGACAATCTTTAATTGGAGGAAATTATGGCCTCCTTGATACTACAAGTTTCATCCCTAATCCTGATTATTACGGTGCTCTTTTGTGGCATCGTCTAATGGGCAAGAGAGTTCTTTCCACCTCTCAAAATGACTCTCCTTACTTGCGCGTATATTCCCATTGTGCGAAGCAAAAGCCGGGCATTAGCATGCTTATAATCAACATGTCAAACTCGACTTGGTTCCAAGTCCAAGTCCAGAATGACATGAATCTGCACCCAACTGCTTCTGAAAGTAATGGAGGACAAGAAAGGGAGGAGTACCATTTGACTCCTCAGAATGGGGATATCCAAAGTGATAAGTTGTTACTCAATGGAAATCTATTATCACTTACAGAAGCATCAGACATCCCAGAAATGAAGCCCAAGCTTGTTGATCCTTCTAGTGCCATTGTAGTTGCCCCTGACTCATTTGTCTATGCAACTCTCAGGGACTTCAAGGCTCCTACATGCATGTAA 1575 0.459 MPMGVKGTMVGVLLFCAWFFEGFAEDVKVTVGGVTSIAETDDNFICATIDWWPADKCDYNQCPWGLAGIFNLDLQNIILVNAIKAFDNLRIRMGGSLQDQILYQIGYAIHDCPQIKKVEGGLFGFSEGCLTMQKWDEVNKLINQTGALFTFGLNALIGKNKPEPPPKGDNITWTGDWDSQNARDLIEYTLSKGYKIDSYELGNELCGSGVSARLDAKQYAKDLVKLRQTVKDVYQKARPMPKIMGPAGFYDKEWFDTFLEAAGPHAVDGLSHHTYNLGPGVDPTLINKVQDPYFLSQIAQTYKDISDSIRLFGPWASAWIGEAGGAYNSGGKDVSHTFANGFWYLDQLGMSASFNHKVFCRQSLIGGNYGLLDTTSFIPNPDYYGALLWHRLMGKRVLSTSQNDSPYLRVYSHCAKQKPGISMLIINMSNSTWFQVQVQNDMNLHPTASESNGGQEREEYHLTPQNGDIQSDKLLLNGNLLSLTEASDIPEMKPKLVDPSSAIVVAPDSFVYATLRDFKAPTCM* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0068 524 FunFam heparanase-like protein 3 64 391 - -
Vvi1g0068 524 Pfam Glycosyl hydrolase family 79, N-terminal domain 27 349 IPR005199 GO:0016020|GO:0016798
Vvi1g0068 524 Gene3D Glycosidases 66 391 - -
Vvi1g0068 524 PANTHER HEPARANASE-RELATED 26 523 - -
Vvi1g0068 524 SUPERFAMILY (Trans)glycosidases 40 393 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0068 Vvi-Chr1 721721 725418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0068 12 523 Glycoside Hydrolase AT5G61250 48.405 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0068 K07964 - vvi:100254131 1085.09