Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0060 ATGGCAGCTTCACCATTCTCTGCAACCTCCACTCAAACTAGTCCATTTTCACATTCCAATTCCTTCTCAAGCTTCTTAGGCTTCAAATGCAGAAGCAGGCATTCATGGCCCTTCTTCATTAGGACCTCCAGTACCTGGCATTCCAGAAGGAGCTTGTCTATCATCAGGAGTGTGGCTAGCAATCAGAAGCAGACTTTGAAGGATCCTCCCACCCAAGAAGTGGGTACTTCTCTTCTCTACAAATTCTTCCTTCACACTTCTCATTTCGATGAGAGAGTTGCAGATGGTCTTGATTCATTTGCACCAGATTCAGCATCAATAGCTTCAAGCATCAAGTACCATTCAGAATTCACGCCGTTGTTCTCCCCCGGACGGTTTGAGCTCCCCAAGGCATACCTTGCAACTGCACAAAGTGTTCAGGATATGCTTATCATAAATTGGAATGCTACATATGATTATTATGAGAAAATGAATGTAAAGCAGGCATATTACTTGTCAATGGAGTATTTACAGGGTAGAGCTTTGCTAAATGCCATAGGCAATTTAGAGCTTTCTGGGCCTTACGCAGAGGCATTGAGAAAGCTTGGGCATAATCTGGAGGATGTAGCTAGTCAGGAACCAGATGCTGCCCTTGGGAATGGGGGACTAGGAAGGCTTGCTTCCTGCTTCCTGGACTCCCTGGCAACACTAAATTATCCGGCTTGGGGCTATGGACTTAGATATAAGTATGGCTTGTTCAAACAGCTCATCACAAAAGATGGTCAGGAGGAAGTTGCAGAAAATTGGCTTGAAATGGGTAATCCTTGGGAAATTGTGAGGAATGATGTCTCCTACCCTGTGAAGTTCTATGGCAAAGTTATCGAAGGCCCGGATGGAAAGAAAGAATGGATTGGAGGAGAAGACATAACTGCTGTTGCTTATGATGTCCCCATACCGGGATATAAAACTAAAACAACAATAAACCTTCGATTATGGTCTACAAAATTGGCATCAGAAGCTTTTGATTTACAGGCTTTTAATACTGGAGATCATGCCAAAGCAAACAAGGCTCAAAAAGATGCTGAAAAGATTTGCTATGTATTATACCCTGGGGATGAGTCAATAGAGGGAAAAACTCTTCGTTTGAAGCAACAATATACATTATGCTCTGCCTCTCTCCAAGATATTATCAGACGATTTGAAAGGAGATCAGGAGGACCTGTGAACTGGGAAAATTTTCCTGAAAAGGTTGCTGTGCAGATGAATGATACTCATCCAACACTCTGCATACCCGAGCTGATAAGAATATTGATGGATGTGAAGGGATTGAGCTGGAAGGAAGCATGGGATATCACTCAAAGAACTGTGGCATACACAAACCATACTGTTCTGCCTGAGGCACTGGAGAAATGGAGTTTGAATCTTTTGAAGGAGTTGCTTCCTCGCCATGTTCAGATCATAGAAATGATTGATGAGGAGCTGATTCAAACCATAACTTCCGAGTATGGAGTGGAGGATCTAGACTTGTTGCAGCAAAAATTGAAACAAATGAGGATCTTGGACAATGTTGAGTTACCTTCCTCAGTCTTAGAATTGCTTGTTAAATCAGAAGAAAAAGGTCCTGCGGTTGATACAATTGAAGAAACTGAAACTTCAAATGAAGGAATAAAACCTAGTAATAAAAAAGATGAGCTTGATGTGGAGGAGTCTGAGACAGAAGAAAAAGTGACTTTTGAACCTGATCTGAAACCGCCAGAGATGGTTCGTATGGCTAATCTGTGTGTAGTTGGTGGCCGAGCAGTCAATGGGGTTGCTGAGATTCATAGTGAAATAGTAAAAACCGATGTTTTTAATGATTTCTATGGGTTGTGGCCAGAGAAATTTCAAAACAAAACAAATGGGGTGACACCAAGAAGATGGATTCGCTTTTGCAATCCCGATCTTAGTAACATCATAACCAAGTGGACTGGAACAGAAGATTGGGTTATAAACACTGAGAAGTTGGCAGAACTAAGAAAATTTGCTGATAATGAGGATCTCCAATCTGAATGGAGGGAAGCAAAAAGGAGAAACAAGATAAAGGTTGTGTCATTCCTGAAAGAAAAAACCGGATATCTTGTCAGCCCAGACGCGATGTTTGATGTACAGGTGAAGCGCATCCATGAGTACAAGCGTCAATTGTTGAATATCATGGGAATTGTCTATCGCTACAAAAAAATGAAAGAAATGAGCCCTGATGAGAGAAAAGCCAACTTTGTTCCTCGAGTATGCATATTTGGAGGAAAAGCATTTGCCACATATGTCCAGGCTAAGAGAATTGTGAAATTCATCACTGATGTAGGGGCTACAGTCAACCATGATCCTGACATAGGTGATCTTTTGAAGGTCGTCTTTGTCCCTGATTACAATGTCAGTGTTGCAGAAGTGCTTATACCTGGTAGTGAGCTGTCCCAGCATATCAGCACGGCTGGAATGGAAGCCAGTGGAACCAGCAACATGAAGTTTGCTATGAATGGCTGCATCCTGATTGGAACCTTAGATGGTGCTAATGTTGAGATAAGGGAAGAGGTAGGAGAAGACAACTTTTTCCTTTTTGGCGCTCGGGCTGATGAGATTGCAGGGCTAAGAAAAGAAAGAGCTGAGGGGAAGTTTGTGCCCGACCCTCGATTTGAAGAAGTGAAGGCATACGTCAGGAGTGGTGTTTTTGGCCCCTACAACTATGAAGAACTGATGGGATCCCTGGAAGGGAATGAAGGCTATGGGCGTGCTGATTACTTCCTTGTTGGCAAGGACTTCCCTAGCTACATAGAGTGCCAGGAGAAGGTTGATGAGGCATACCGAGACCAGAAAAAATGGACAAAAATGTCAATCCTGAACACGGCTGGTTCATACAAGTTCAGCAGTGACCGAACAATTCATGAATACGCGAGACACATATGGATGATCGATCCTATTGTAATACCATAA 2946 0.427 MAASPFSATSTQTSPFSHSNSFSSFLGFKCRSRHSWPFFIRTSSTWHSRRSLSIIRSVASNQKQTLKDPPTQEVGTSLLYKFFLHTSHFDERVADGLDSFAPDSASIASSIKYHSEFTPLFSPGRFELPKAYLATAQSVQDMLIINWNATYDYYEKMNVKQAYYLSMEYLQGRALLNAIGNLELSGPYAEALRKLGHNLEDVASQEPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQLITKDGQEEVAENWLEMGNPWEIVRNDVSYPVKFYGKVIEGPDGKKEWIGGEDITAVAYDVPIPGYKTKTTINLRLWSTKLASEAFDLQAFNTGDHAKANKAQKDAEKICYVLYPGDESIEGKTLRLKQQYTLCSASLQDIIRRFERRSGGPVNWENFPEKVAVQMNDTHPTLCIPELIRILMDVKGLSWKEAWDITQRTVAYTNHTVLPEALEKWSLNLLKELLPRHVQIIEMIDEELIQTITSEYGVEDLDLLQQKLKQMRILDNVELPSSVLELLVKSEEKGPAVDTIEETETSNEGIKPSNKKDELDVEESETEEKVTFEPDLKPPEMVRMANLCVVGGRAVNGVAEIHSEIVKTDVFNDFYGLWPEKFQNKTNGVTPRRWIRFCNPDLSNIITKWTGTEDWVINTEKLAELRKFADNEDLQSEWREAKRRNKIKVVSFLKEKTGYLVSPDAMFDVQVKRIHEYKRQLLNIMGIVYRYKKMKEMSPDERKANFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPDIGDLLKVVFVPDYNVSVAEVLIPGSELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIREEVGEDNFFLFGARADEIAGLRKERAEGKFVPDPRFEEVKAYVRSGVFGPYNYEELMGSLEGNEGYGRADYFLVGKDFPSYIECQEKVDEAYRDQKKWTKMSILNTAGSYKFSSDRTIHEYARHIWMIDPIVIP* 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0060 981 MobiDBLite consensus disorder prediction 534 571 - -
Vvi1g0060 981 FunFam Alpha-1,4 glucan phosphorylase 101 529 - -
Vvi1g0060 981 PIRSF Glucan_phosphorylase_GlgP 125 981 IPR000811 GO:0005975|GO:0008184
Vvi1g0060 981 Gene3D Glycogen Phosphorylase B; 96 630 - -
Vvi1g0060 981 ProSitePatterns Phosphorylase pyridoxal-phosphate attachment site. 819 831 IPR035090 -
Vvi1g0060 981 FunFam Alpha-1,4 glucan phosphorylase 628 960 - -
Vvi1g0060 981 PANTHER GLYCOGEN PHOSPHORYLASE 93 978 IPR000811 GO:0005975|GO:0008184
Vvi1g0060 981 CDD GT35_Glycogen_Phosphorylase 110 973 - -
Vvi1g0060 981 MobiDBLite consensus disorder prediction 534 561 - -
Vvi1g0060 981 Pfam Carbohydrate phosphorylase 192 974 IPR000811 GO:0005975|GO:0008184
Vvi1g0060 981 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 100 978 - -
Vvi1g0060 981 Gene3D Glycogen Phosphorylase B; 631 960 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0060 Vvi-Chr1 649077 654363 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0060 6 981 Glycosyltransferase AT3G29320 72.358 0.0 1461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0060 K00688 - vvi:100257811 1891.32