Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0055 ATGGAGACTGCGAAAGCCGCAAGAACTGTGAAAGACGTTTCTCCTCACGAGTTCGTCAAGGCCTATTCTTCTCACCTCAAGCGATCTGGGAAGATAGAGCTTCCTCACTGGACTGATATTGTGAAGACTGCTACGTTCAAGGAGCTTGCTCCATATGATCCTGATTGGTACTATGTAAGAGCTGCTTCAATGGCAAGGAAAATTTATTTGAGGCAGGGTCTAGGAGTTGGTGGCTTCCGAAGAATTTATGGTGGGAGCAAGAGGAATGGAAGTCGCCCACCCCACTTCTGTAAGAGCAGTGGTTCCATTGCTCGCCACATACTCCAACAGTTGGAGAAGATGAACATTATTGAAAATGACCCCAGGGGTGGAAGGAGAATCACATCCAGTGGCCAGCGGGATCTCGACCAAGTTGCTGGACGGATTGTAGTTGCCCTTTAA 441 0.483 METAKAARTVKDVSPHEFVKAYSSHLKRSGKIELPHWTDIVKTATFKELAPYDPDWYYVRAASMARKIYLRQGLGVGGFRRIYGGSKRNGSRPPHFCKSSGSIARHILQQLEKMNIIENDPRGGRRITSSGQRDLDQVAGRIVVAL* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0055 146 Gene3D - 1 145 IPR036388 -
Vvi1g0055 146 ProSitePatterns Ribosomal protein S19e signature. 93 112 IPR018277 GO:0003735|GO:0005840|GO:0006412
Vvi1g0055 146 FunFam 40S ribosomal protein S19 5 146 - -
Vvi1g0055 146 SUPERFAMILY "Winged helix" DNA-binding domain 9 144 IPR036390 -
Vvi1g0055 146 Pfam Ribosomal protein S19e 9 143 IPR001266 GO:0003735|GO:0005840|GO:0006412
Vvi1g0055 146 PANTHER 40S RIBOSOMAL PROTEIN S19 9 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Vvi1g0055 146 SMART Ribosomal_S19e_2 9 145 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0055 Vvi-Chr1 599284 602644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0055 7 144 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 86.232 4.19e-89 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0055 K02966 - vvi:100266271 298.13