Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0051 ATGGCTCGTCCGTCTTCTTCAGTGGCTTTGAATCTGATTCTCCTTCTGTCCTTGTTTCTCGACCTCGGCCTCTGCAAAACCCTAAAGCGTGATGTGAAGGCTTTGAACGAAATCAAGGCGTCTCTGGGATGGAGAGTGGTGTACGCGTGGGTCGGAGACGATCCCTGCGGCGACGGCGACCTCCCGCCTTGGTCTGGTGTCACCTGCTCTACTCAGGGTGATTATAGAGTAGTTACTGAACTGGAAGTTTATGCAGTGTCGATTGTGGGGCCTTTTCCTACTGCTGTGACCAATTTGTTGGATCTTACAAGGCTGGATCTCCATAATAACAAGTTGACTGGGCCTATTCCTCCACAAATTGGACGGCTGAAGCGTCTTAGAATACTTAATTTGAGGTGGAATAAGCTACAAGATGTCATTCCTCCTGAAATAGGTGAATTGAAGAGATTAACACATCTATATCTGAGCTTCAATAATTTCAAAGGGGAAATCCCCAAGGAGCTTGCAAATCTTCCTGAGCTTCGTTACCTCTATCTACATGAAAATCGTTTTGTTGGCCGTATTCCTCCAGAATTGGGCACTCTGCAAAACCTTCGGCACTTGGATGTTGGCAACAATCATTTGGTGGGTACCATAAGGGAACTCATACGCATTGAGGGATGCTTTCCTGCTCTTCGCAACCTCTATCTGAATAACAATTATTTCAGTGGAGGAATTCCAGCACAACTTGCAAACTTGACGAACTTAGAAATCTTGTACCTATCCCACAACAAAATGTCTGGTGTAGTACCATCTGGGCTTGCTCATATTCCTAGATTGACTTCCTTGTTCTTGGATCACAATCAATTTTCAGGGAGAATTCCTGATGCCTTCTATAAGCACCCTTTTCTGAAAGAAATGTACATTGAAGGAAATGCATTCCGGCCAGGTGTGAAACCCATAGGTGTACACAAAGTCCTCGAAGTTTCTGACACGGATTTCCTCTTTTAG 990 0.4495 MARPSSSVALNLILLLSLFLDLGLCKTLKRDVKALNEIKASLGWRVVYAWVGDDPCGDGDLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPTAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPPEIGELKRLTHLYLSFNNFKGEIPKELANLPELRYLYLHENRFVGRIPPELGTLQNLRHLDVGNNHLVGTIRELIRIEGCFPALRNLYLNNNYFSGGIPAQLANLTNLEILYLSHNKMSGVVPSGLAHIPRLTSLFLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVKPIGVHKVLEVSDTDFLF* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0051 329 SMART LRR_typ_2 246 269 IPR003591 -
Vvi1g0051 329 SMART LRR_typ_2 270 294 IPR003591 -
Vvi1g0051 329 SMART LRR_typ_2 171 195 IPR003591 -
Vvi1g0051 329 SMART LRR_typ_2 99 123 IPR003591 -
Vvi1g0051 329 SMART LRR_typ_2 147 170 IPR003591 -
Vvi1g0051 329 Pfam Leucine Rich Repeat 197 209 IPR001611 GO:0005515
Vvi1g0051 329 PRINTS Leucine-rich repeat signature 102 115 - -
Vvi1g0051 329 PRINTS Leucine-rich repeat signature 246 259 - -
Vvi1g0051 329 PANTHER OS10G0469600 PROTEIN 127 212 - -
Vvi1g0051 329 FunFam Putative leucine-rich repeat receptor-like protein kinase 27 217 - -
Vvi1g0051 329 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Vvi1g0051 329 Pfam Leucine rich repeat 223 283 IPR001611 GO:0005515
Vvi1g0051 329 FunFam Leucine-rich repeat receptor protein kinase EMS1 218 313 - -
Vvi1g0051 329 Gene3D Ribonuclease Inhibitor 24 218 IPR032675 -
Vvi1g0051 329 Gene3D Ribonuclease Inhibitor 219 318 IPR032675 -
Vvi1g0051 329 SUPERFAMILY L domain-like 32 308 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0051 101 317 Receptor kinase-like Gene Family AT3G11080 29.536 1.10e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0051 - - vvi:100243945 644.81