LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g0049	ATGTCGACCGAGAAGGAAAGAGAGACTCAGGTTTACATGGCCAAGCTCGCCGAACAGGCTGAGCGCTATGAAGAAATGGTGGAGTGTATGAAAACAGTGGCAAAACTCGACCTTGAGCTAACTGTGGAGGAGAGGAACCTCCTCTCTGTGGGGTACAAAAATGTTATAGGCGCTCGACGTGCTTCTTGGCGCATTATGTCTTCGATTGAGCAGAAAGAAGAGTCAAAGGGAAACGAGCAGAATGTTAAACTGATTAAGGGTTACCGCCAGAAGGTTGAGGAGGAGCTCTCCAAGATTTGTGGTGACATTCTGACAATCATAGACAAACACCTGATCCCCTCTTCTGGCTCGGGGGAAGCCACTGTGTTCTATTACAAGATGAAAGGTGACTACTACCGGTATCTGGCTGAGTTCAAGACTGACCAGGAAAGGAAAGAGGCCTCTGAGCAGTCACTGAAGGGCTACGAGGCTGCCTCCAGCACTGCTAACACTGACCTCCCTTCAACCCACCCAATCCGTCTTGGCCTTGCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAGGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCAGAATTGGACACCTTGAGCGAGGAGTCATACAAGGACAGCACTCTGATTATGCAGCTGTTGAGAGACAACCTCACTCTCTGGACCTCTGATTTGCCTGAAGATGGAGGTGAAGACAACTTCAAAGGTGAAGAACCCAAGGCTGCTGAACCTACTGAGCATTGA	783	0.4866	MSTEKERETQVYMAKLAEQAERYEEMVECMKTVAKLDLELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEQNVKLIKGYRQKVEEELSKICGDILTIIDKHLIPSSGSGEATVFYYKMKGDYYRYLAEFKTDQERKEASEQSLKGYEAASSTANTDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEDNFKGEEPKAAEPTEH*	261

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g0049	260	ProSitePatterns	14-3-3 proteins signature 2.	217	236	IPR023409	-
	Vvi1g0049	260	Pfam	14-3-3 protein	13	235	IPR023410	-
	Vvi1g0049	260	Coils	Coil	13	33	-	-
	Vvi1g0049	260	ProSitePatterns	14-3-3 proteins signature 1.	45	55	IPR023409	-
	Vvi1g0049	260	SUPERFAMILY	14-3-3 protein	6	237	IPR036815	-
	Vvi1g0049	260	MobiDBLite	consensus disorder prediction	238	260	-	-
	Vvi1g0049	260	Coils	Coil	195	215	-	-
	Vvi1g0049	260	MobiDBLite	consensus disorder prediction	241	260	-	-
	Vvi1g0049	260	PRINTS	14-3-3 protein zeta signature	154	180	IPR000308	-
	Vvi1g0049	260	PRINTS	14-3-3 protein zeta signature	119	141	IPR000308	-
	Vvi1g0049	260	PRINTS	14-3-3 protein zeta signature	208	237	IPR000308	-
	Vvi1g0049	260	PRINTS	14-3-3 protein zeta signature	39	68	IPR000308	-
	Vvi1g0049	260	PRINTS	14-3-3 protein zeta signature	88	112	IPR000308	-
	Vvi1g0049	260	PRINTS	14-3-3 protein zeta signature	181	207	IPR000308	-
	Vvi1g0049	260	SMART	1433_4	7	248	IPR023410	-
	Vvi1g0049	260	PIRSF	14-3-3	1	247	IPR000308	-
	Vvi1g0049	260	PANTHER	14-3-3 PROTEIN	7	237	IPR000308	-
	Vvi1g0049	260	Gene3D	-	1	247	IPR036815	-
	Vvi1g0049	260	FunFam	14-3-3 protein epsilon	1	248	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g0049	Vvi-Chr1	563636	566636	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g0049	3	253	14-3-3 family	AT1G26480	87.649	6.53e-166	458

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi1g0049	-		K06630	vvi:100254211	516.153