Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0045 ATGGCGTCCCAAATGGCGATCCTCTCCAGAGCCCGTAAAACCCTCCTCAAAACCCTAAACCACCACAATAATCCCTTTAAAGCTTCCATTTCCACCTTCACATTCCTCTCCCAGGAACCCCAACTGGCCGAGCCCAGCCTCCCCCCGCCATCTCCCACTCCACTTCCTCCCAACCCCGCCTCAGGGAGCCCGCTCTACAACGAGAACTGGCGGAGCCCCATCCCCCAGGCTCAGTCCATCATTCCTCTAGGATTTCTGCACCAGTCCTCTTCGTCGCGGCTGCAGGCGCTGTCGCAGACGCTGGATGTGCCGAGCCTGATGAACGTGTTCGCCGACTGGATGACGTCGCAGCGGTGGGCGGATATGAATCAGCTGTTCGAGTTTTGGATTAGGTCGCTTGATAAGAATGGGAAGCCGAATAAGCCGGATGTGAACTTGTATAACCATTACTTGAGGGCGAAGTTGATGATCGGCGCCTCGGCTGGGGAGCTGCTGGATCTGGTGGCGCAGATGGAGGACTACGCCATCATTCCTAATACGGCGTCGTTTAATTTAGTGTTGAAGGCAATGTATCAAGCCAGAGAGACCGAGGCCGCCGAGAAGTTGTTTCAGCGGATGCTGCAGACAGGAAAGGAATCTATGCCTGATGATGAGTCATATGAATTGGTTGTTGGTATGCTGTTTTTGACAGACCAGATTGATGCTGCCTTGAGATATGTTGATTTGACTTTGAAATCTGGTTATATGTTGTCAATGAGGGTTTTTGCTGAGTGTGTGAGAAGTTGTGTTAACAAAGGCAGGCTGGATGCTTTGGTGTCTATTATAGAGAGGTGCAAGACAATGGATCAGAATAAAGCTCTTTCTCCCTCCTGGAACATGTGCATCTTCATTGCAGATATTGCGATGCAAGAGGATAATAGCAAATTAGCTTTTTATGCCCTGGAATTCATGGCCAGATGGATTGCTCGGGGTGAGAATGCAAGGGGCCCTGTTCTACTCTCTGTGGATGAGGGGCTTGTTGTATCAGCACTTGGAACTGCTGGTAGGACTTACAGTTCTACTCTTCTAGATGCATCATGGGCGATCCTACGACGATCATTGCGTCAAAAGAAGGCACCTCAACCAGAATCTTATCTTGCAAAAATATATGCCGATGCAGCATTGGGGAATTTGCAGAGAGCATTCAGCACTCTGCATGAGTTTGAAACCGCTTATAGGAACTCCCCCAAAGAAGCAGAAGAGGACATATTCTCACCTTTTACATCTTTACATCCTTTGGTAATGGCAAGCTCCAAGAAGGGTTTTGAAACTTTGGACACGGTTTATTTTCAATTGGAGAATCTGAGCCGTGCAGACCCTCCTTACAAGTCTGTTGCTGCTCTGAATTGTGTTATTTTAGGTTGTGCGAATATATGGGACCTTGACAGGGCCTACCAGACTTTTGAGGCAATTGGTTCTTCTTTTGGATTGACCCCTGATATACATTCATACAATGCTTTGATGTATGCATTTGGAAAGCTCAAGAAGACATTTGAAGCTTCAAGGGTGTTTGAGCACTTAACCAGTCTGGGCATAAAACCAAATGCAATGTCATTTTCATTGCTTGTGGATGCTCATCTCATCAACCGAGATCAAAAAGCTGCTCTCTCTGTGATTGAAGAGATGATAAATGCTGGATTTGCACCATCGAAAGAGATACTTAAAAAGGTGAGAAGACGATGCATTAGGGAAATGGACTACGAGAGTAATGACCAGGTGGAGTCCCTGGCGAGAAAGTTTAAGATCCGTATGGGCACAGAAAATCGCAGAGACATGCTGTTCAACCTTGCGTACAACACCGAGTATGCTTGA 1851 0.4733 MASQMAILSRARKTLLKTLNHHNNPFKASISTFTFLSQEPQLAEPSLPPPSPTPLPPNPASGSPLYNENWRSPIPQAQSIIPLGFLHQSSSSRLQALSQTLDVPSLMNVFADWMTSQRWADMNQLFEFWIRSLDKNGKPNKPDVNLYNHYLRAKLMIGASAGELLDLVAQMEDYAIIPNTASFNLVLKAMYQARETEAAEKLFQRMLQTGKESMPDDESYELVVGMLFLTDQIDAALRYVDLTLKSGYMLSMRVFAECVRSCVNKGRLDALVSIIERCKTMDQNKALSPSWNMCIFIADIAMQEDNSKLAFYALEFMARWIARGENARGPVLLSVDEGLVVSALGTAGRTYSSTLLDASWAILRRSLRQKKAPQPESYLAKIYADAALGNLQRAFSTLHEFETAYRNSPKEAEEDIFSPFTSLHPLVMASSKKGFETLDTVYFQLENLSRADPPYKSVAALNCVILGCANIWDLDRAYQTFEAIGSSFGLTPDIHSYNALMYAFGKLKKTFEASRVFEHLTSLGIKPNAMSFSLLVDAHLINRDQKAALSVIEEMINAGFAPSKEILKKVRRRCIREMDYESNDQVESLARKFKIRMGTENRRDMLFNLAYNTEYA* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0045 616 Pfam PPR repeat 182 208 IPR002885 -
Vvi1g0045 616 Gene3D Tetratricopeptide repeat domain 338 606 IPR011990 GO:0005515
Vvi1g0045 616 PANTHER OS07G0599000 PROTEIN 1 616 IPR044605 -
Vvi1g0045 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Vvi1g0045 616 MobiDBLite consensus disorder prediction 41 64 - -
Vvi1g0045 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Vvi1g0045 616 MobiDBLite consensus disorder prediction 43 61 - -
Vvi1g0045 616 NCBIfam pentatricopeptide repeat 495 529 IPR002885 -
Vvi1g0045 616 Pfam Pentatricopeptide repeat domain 515 563 IPR002885 -
Vvi1g0045 616 Gene3D Tetratricopeptide repeat domain 106 321 IPR011990 GO:0005515
Vvi1g0045 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0045 Vvi-Chr1 529830 543820 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0045 490 586 Glycosyltransferase AT1G05670 24.742 5.47e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0045 - - vvi:100249185 1173.69