Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0044 ATGGCTGTTTTAGTGTATTTTGTGCTTTTCCTGGCCATGACTGGCCATTCAAGTGCTGCTGTCTATTGTGTGTGTAAAGATGGGTTGAGTGACCAAGCTCTTCAGAAAACCTTGGATTATGCCTGTGGAGCTGGAGCTGACTGCTCCCCAGTTCTTCAAAATGGGGCTTGTTACAACCCCAACACTGTGAAGGATCACTGTAGTTATGCTGTTAACAGCTATTTCCAGAAGAAGGGTCAAGCTTCTGGGAGCTGTGATTTTGCAGGAACTGCTACCCAAAGTCAGACTAACCCTTCCAGCGTTTCAACTTGTGTTTATCCTACAAGTGCAAGCTCCACAGGAAGCAGCACAACTCCATCCACAACCACACCATCCACGACCACACCTTCCACAACCACACCCTCAACCACGACTCCAAGCAGCACCACCAGTCCCTCAGTGTTTGGCCTAGGCCCCTCGGGAAGTGGTGGCATCACCAGCACGGACTCCAGTGCTGCAGTGGCTCCCCTTCACTGCACTGACTTGTTCTTTTCTGCAGCTCTAACCCTCTGGCTCTCAGGCCTAGTGTTGTTGTGGGGCTGA 582 0.5103 MAVLVYFVLFLAMTGHSSAAVYCVCKDGLSDQALQKTLDYACGAGADCSPVLQNGACYNPNTVKDHCSYAVNSYFQKKGQASGSCDFAGTATQSQTNPSSVSTCVYPTSASSTGSSTTPSTTTPSTTTPSTTTPSTTTPSSTTSPSVFGLGPSGSGGITSTDSSAAVAPLHCTDLFFSAALTLWLSGLVLLWG* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0044 193 SMART X8_cls 21 106 IPR012946 -
Vvi1g0044 193 FunFam Glucan endo-1,3-beta-glucosidase 4 16 110 - -
Vvi1g0044 193 Pfam X8 domain 22 92 IPR012946 -
Vvi1g0044 193 Gene3D - 16 122 - -
Vvi1g0044 193 MobiDBLite consensus disorder prediction 109 155 - -
Vvi1g0044 193 PANTHER BETA-1,3 GLUCANASE 8 124 IPR044788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0044 Vvi-Chr1 524273 525825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0044 15 126 Miscellaneous Gene Families AT2G16230 40.351 4.00e-22 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0044 - - vvi:100242217 274.248