Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0040 ATGAATATGAGAAGAACAACCCATAAACTTCTCATAACACTCTTCAATCAACTCAATGTTCGTCCTTTAACCACGCTCCCTCAACTCCCCCAACCCACCTCTATAGTTAACCCAAACCACCTGCTCCGAGTCTGCACTGTCCTCTACCAACAGCAGAACTCACCCGAAGTCAGACTCCAAACCCATCTCCGGGCCTGCGAGTTCCACCTCACCCACGAGTTCTTCCTCCAAGTCTGCAACAAATTCCCACTTTCATGGCGACCCGTTTACAAGTTCTTCGAGTTCACCGAAACCCAACCCTGTTTCCATCACAATTCAGTTACTTTCAACAAGATGGTCGACGTGATTGGACGATCCAGAAACATCAAACTTTTCTGGGAGGTTCTGCAGGAGATGGGACGGCGTCGTCTTGCCAATGATAAGACGTTTGTGATTGCTTTGAAGACGTTGGCTTCGATCAGAGAGATGAAGAAGTGCGTGGAGTTTTTTCATTTGATGAATGCCCACGAATATGGTTATAGTTTGGAGACTTTGAATAAGGTGGTTGAGGTTCTGTGTAGGAGTAAGCTTGCGGTTGAAGCTAAAGAAATTGTTTTGAAGTTGAAAACTTGGATTCCGCCAAGTGGGGTTACGTATGGGTATTTGATTAAGGGTTTTTGTGAGGTTGGCGATTTGATTGAGGCGGCAAACGTTTGGGATTTGATGGTGGATGAAGGGTTTCGGCCGGGCATTGACGCGGTGGAGAAGATGATGGAGACCCTTTTCAACATTAATAGGTTTGATGAAGCAATGAAGCTTTTTCAGGCAGTGAGAACAACAAGGTTTGATGAGTTGGTTCTTTCTACTTACAGTCTTGTGATCGATTGGATGTGTAAAAGAGGCAAGGTCTCGCAAGCCTATATGGTGTTTGAAGAAATGCTCAAGAGAGGGATTCAACCTGATAATAAGACAATGTCCTCATTAATTTATGGGCTTCTGGCAAAAGGGAGAGTTAGAGAGGCTAATAAGATTACGGAAGGTATTGAAAGGCCGGATATAGCTGTGTATCATGGAGTGATTAAGGGGCTTCTGAGGTTGAGAAAGGCAGGTGAAGCTACACAAGTGTTTCGGGAGATGATAAGGAGGGGGTGTGAGCCTACAATGCATACCTATATTATGCTATTGCAAGGGCATTTAGGGAAGAAAGGGAGGAAAGGGCCACACCCACTTGTGAATTTTGATAGTATTTTTGTAGGGGGTTTGATTAAGGTGGGGAAGTCATTAGACGCCAGTAAGTATGTGGAGAGAATGATGGATGGGGGAATGGAAGTACCCAGGTTTGACTACAACAGATTTCTGCATTGTTATTCAAATGAGGAAGGTGTATTTATGTTTGAGGAGGTTGGGAAGAAGTTGAGAGAGGTTGGGTTGGTTGACTTAGCAGATATATTCTTGAGGTATGGGGAAAAAATGGCTACTAGAGATAGGAGAAGAAATAGAGTAGCTGAACCTTTAGAAGAGCTTCTAAGGTCCCAATTTCAAAATGGGGCAAATGGGATCTCAGGAACTGATCAAATACAACAAGAAAGGGCAAGTTGA 1578 0.4398 MNMRRTTHKLLITLFNQLNVRPLTTLPQLPQPTSIVNPNHLLRVCTVLYQQQNSPEVRLQTHLRACEFHLTHEFFLQVCNKFPLSWRPVYKFFEFTETQPCFHHNSVTFNKMVDVIGRSRNIKLFWEVLQEMGRRRLANDKTFVIALKTLASIREMKKCVEFFHLMNAHEYGYSLETLNKVVEVLCRSKLAVEAKEIVLKLKTWIPPSGVTYGYLIKGFCEVGDLIEAANVWDLMVDEGFRPGIDAVEKMMETLFNINRFDEAMKLFQAVRTTRFDELVLSTYSLVIDWMCKRGKVSQAYMVFEEMLKRGIQPDNKTMSSLIYGLLAKGRVREANKITEGIERPDIAVYHGVIKGLLRLRKAGEATQVFREMIRRGCEPTMHTYIMLLQGHLGKKGRKGPHPLVNFDSIFVGGLIKVGKSLDASKYVERMMDGGMEVPRFDYNRFLHCYSNEEGVFMFEEVGKKLREVGLVDLADIFLRYGEKMATRDRRRNRVAEPLEELLRSQFQNGANGISGTDQIQQERAS* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0040 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Vvi1g0040 525 NCBIfam pentatricopeptide repeat 348 380 IPR002885 -
Vvi1g0040 525 NCBIfam pentatricopeptide repeat 282 314 IPR002885 -
Vvi1g0040 525 NCBIfam pentatricopeptide repeat 210 243 IPR002885 -
Vvi1g0040 525 Gene3D Tetratricopeptide repeat domain 177 276 IPR011990 GO:0005515
Vvi1g0040 525 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 91 337 - -
Vvi1g0040 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Vvi1g0040 525 Gene3D Tetratricopeptide repeat domain 277 340 IPR011990 GO:0005515
Vvi1g0040 525 Gene3D Tetratricopeptide repeat domain 75 171 IPR011990 GO:0005515
Vvi1g0040 525 Gene3D Tetratricopeptide repeat domain 341 467 IPR011990 GO:0005515
Vvi1g0040 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Vvi1g0040 525 Pfam PPR repeat 210 240 IPR002885 -
Vvi1g0040 525 Pfam PPR repeat family 282 325 IPR002885 -
Vvi1g0040 525 Pfam PPR repeat family 344 390 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0040 Vvi-Chr1 498867 500444 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0040 196 471 Miscellaneous Gene Families AT4G11690 25.965 9.44e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0040 - - vvi:100259407 1049.65