Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0037 ATGTGGAGAAGGGCCGTGGCAGTGAGGTTTGCTCCACAGAGGCGCTTCTCCTCCACATCCGAATCCGAATTCCCAACCCTCTACTCCTTCCTCCAACCATCACTTTTTTCTCTCAAACCAATCCCTTCAGCACCACGGTCACCACACCCAACATCTCCTAAACCCCTCCAGAGCCCTGCCCCAGAGGACCTAGAATCCGCACTCCACACATCCCTCTCTACCAACAACACTGATGAAGCTTGGAAGTCTTTCAAGGCTCTCACTACCAATTCCACCTTCCCAAGTAAGTCCCTCGCCAACTCCCTCATTGCCCACCTGGCTTCTCTCCATGACCTCTATAATCTCAAGAGGGCTTTTGCTTCTGCTGTATTTTTGCTGGAGAAAAACCCCAGTTTGTTGGATTTTGGGACTGTTCGAACCCTTTTGGGTTCCATGAATTCTGCTAATACCGCTGCTCCTGCTTTTGCTTTGATCAATTGTATGTTCAAGAATAGGTATTTCATGCCTTTCTCTATGTGGGGTGGTGTTATTGTTGAGATTACGCGAAGGAATCGTAGCTTTGTTGCGTTTTTACGTGTTTTTAATGAGACTTGTAGGATTGCAATTGATGAGAAGTTGGAATCTATGAAACCTGACTTGGATGCCTGCAATGTGGCGTTGGAGGGGTGCAGTCAGGATCTTGAATCTGTGAGCGAGGCTGAGAAGGTTGTGGAGATGATGTCGGTTTTGGGTATCCAGCCTGATGAATCAAGTTTTGGGTTTCTTGCTTATTTGTATGCATTGAAGGGTCTTGAAGAAAAGATAGTTGAGTTAGAAGGTTTGATGCGTGGGTTTGGTTTTTCAAGCAAAAAGGTAATTTACAGTTATCTGATTAATGCATATGTCAAGTCTGGCAATTTGGAATATGTGTCCAGGACCATTTTTCGGAGTTTGAGAGAAGACGATGAACAAGGTCCAAACTTTAGCGAAGAAACTTATTGTGAAGTGGTAAAAGGGTTTTTGCAAAATGGCAGTATTAAGGATTTAGCAAGTTTGATAATTGAAACTCAAAAGTTGGAGCCCTCATCAATTGCGGTTGATAGATCTATTGGATATGGTATTATTAGTGCTTGTGTTAGTCTTGGATTCTTAGATAAGGCACATAGTATTCTTGATGAAATGAATGTTCAGGGAGTTTCTGTTGGGCTTGGGGTCTATGTGTCAATACTGAAGGCCTTCTGCAAAGAGCATCGAACTGCTGAAGCTGCTCAATTGGTCACGGAAATCAGCAGTTTGGGCCTTCAGTTGGATGCTGGCAGTTATGATGCTTTGATTGAAGCATCAATGTCAAGCCAAGATTTTCAGTCGGCATTTTCTTTGTTTAGAGACATGAGGGAAGCAAGAGTACCTGATATGAAGGGGAGTTATCTCACGATGATGACAGGTTTAACAGAGAATCACCGGCCTGAATTAATGGCTGCCTTCTTAGATGAGATTGTTGAGGACCCGCGAGTTGAAGTGGGTACCCATGACTGGAATTCAATTATTCATGCCTTTTGTAAGGTTGGGCGATTAGAAGATGCAAGGAGGACTTTCAGAAGGATGATCTTTCTACAGTTTGAACCAAATGATCAAACCTATTTGTCCCTTATTAATGGATATGCAAGTGCAGAGAAATATTTTAGTGTTTTAATGCTGTGGAATGAGGTCAAGAGAAGGATTTCAATTGATGGAGAGAAGGGGGTCAAATTTGATCACAACTTGGTTGATGCATTCCTGTATGCTCTAGTTAAAGGGGGCTTTTTCGATGCCGTGATGCAGGTTGTGGAGAAATCTCAGGAGATGAAGATCTTTGTAGATAAGTGGAGGAAAGACACAGAAAAGAAAGGGCCCAGTGTTGAAAGTAAATCACCTCCACCGAAAAGAACACCTTTTCAAATTTCAATTGCTAGTTGTCCTGCATTATTGTACTTCCTATTTGTGTCCCTCAAACACCATCTCATCCCAAAACCTTCACCAATGTCATCTTCCTCAACTCCATGGCCTCTCATCCTCATTTTCTTCTCTCTCCCTCTAGTCCATTCCCGCTCCGACATTGTCCGAGCGATGCCACCCAATGGAACATGTAGTGATGTATGTGGCAATATCACTGTCAAGTTCCCATTTGGCACTGGATTTGGTTGCGGCCACCCCGACTTTGCTAGATACGTAAAATGTAGCTCTGGGACACTTCAATTCTCTACTCTCACTGGCATTTACACGGTTGCTTCAATTGACTACTCCAGCAGCACTATCATTGTCAATGACCCTCTTATGTCAACTTGCACTTCTATGCAGAACTCTGGAAGCTTTAGCTTGGACAGGGCCAGCCCATTCACTATAATGGCGGATGATGTATTTGTCTTGCTTGGTTGCTCCACAACCTCTCCAGTGTTTGATCTAAATGAAGATTTATGTGATACAGGTTCAGGTTCTCATGCATGCAGAGGGCTCTATTCTTGCAAAGGGGTGACTGGGATTGGCTTGGACCCCAATGCACCGACTTCTACTTGTTGTGTTTACAACTCCCTGGATGGGGTTGGGTCTGGTTATGGGCTGGATCTTCCAAAGCTACAATGCTCATCCTATGCATCGATATATGGGCTTGGCGATGATGAGGGGGACCCAATGAAATGGAAATTTGGGATTTCTTTGCAATATAATAGCTCAGATTCTGATGCTTGCAAGGATTGTGAAGCAAGTGGGGGCTTGTGTGGCTTCACTGGTTTGGATGAGTCATTTGCTTGTATTTGTCAGAATGGGGTGAACACCACCACCAACTGCTTTGGACGAGGGTATGCTTGGAGTGGAACATGGGGACCCAAAATTCAAACCAAGATGAGTATTGCAGGACTTCTGCTCTGGTGGATGGTGTTCTCTGTTTGA 2904 0.4411 MWRRAVAVRFAPQRRFSSTSESEFPTLYSFLQPSLFSLKPIPSAPRSPHPTSPKPLQSPAPEDLESALHTSLSTNNTDEAWKSFKALTTNSTFPSKSLANSLIAHLASLHDLYNLKRAFASAVFLLEKNPSLLDFGTVRTLLGSMNSANTAAPAFALINCMFKNRYFMPFSMWGGVIVEITRRNRSFVAFLRVFNETCRIAIDEKLESMKPDLDACNVALEGCSQDLESVSEAEKVVEMMSVLGIQPDESSFGFLAYLYALKGLEEKIVELEGLMRGFGFSSKKVIYSYLINAYVKSGNLEYVSRTIFRSLREDDEQGPNFSEETYCEVVKGFLQNGSIKDLASLIIETQKLEPSSIAVDRSIGYGIISACVSLGFLDKAHSILDEMNVQGVSVGLGVYVSILKAFCKEHRTAEAAQLVTEISSLGLQLDAGSYDALIEASMSSQDFQSAFSLFRDMREARVPDMKGSYLTMMTGLTENHRPELMAAFLDEIVEDPRVEVGTHDWNSIIHAFCKVGRLEDARRTFRRMIFLQFEPNDQTYLSLINGYASAEKYFSVLMLWNEVKRRISIDGEKGVKFDHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKIFVDKWRKDTEKKGPSVESKSPPPKRTPFQISIASCPALLYFLFVSLKHHLIPKPSPMSSSSTPWPLILIFFSLPLVHSRSDIVRAMPPNGTCSDVCGNITVKFPFGTGFGCGHPDFARYVKCSSGTLQFSTLTGIYTVASIDYSSSTIIVNDPLMSTCTSMQNSGSFSLDRASPFTIMADDVFVLLGCSTTSPVFDLNEDLCDTGSGSHACRGLYSCKGVTGIGLDPNAPTSTCCVYNSLDGVGSGYGLDLPKLQCSSYASIYGLGDDEGDPMKWKFGISLQYNSSDSDACKDCEASGGLCGFTGLDESFACICQNGVNTTTNCFGRGYAWSGTWGPKIQTKMSIAGLLLWWMVFSV* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0037 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Vvi1g0037 967 Pfam Wall-associated receptor kinase C-terminal 888 926 IPR032872 -
Vvi1g0037 967 Pfam Pentatricopeptide repeat domain 418 462 IPR002885 -
Vvi1g0037 967 MobiDBLite consensus disorder prediction 41 64 - -
Vvi1g0037 967 Pfam PPR repeat family 505 548 IPR002885 -
Vvi1g0037 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Vvi1g0037 967 Pfam PPR repeat 367 391 IPR002885 -
Vvi1g0037 967 Pfam PPR repeat 285 301 IPR002885 -
Vvi1g0037 967 Pfam Wall-associated receptor kinase galacturonan-binding 702 762 IPR025287 GO:0030247
Vvi1g0037 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 247 IPR002885 -
Vvi1g0037 967 MobiDBLite consensus disorder prediction 43 57 - -
Vvi1g0037 967 Gene3D Tetratricopeptide repeat domain 60 362 IPR011990 GO:0005515
Vvi1g0037 967 Gene3D Tetratricopeptide repeat domain 497 641 IPR011990 GO:0005515
Vvi1g0037 967 PANTHER BNAC05G43320D PROTEIN 1 965 - -
Vvi1g0037 967 NCBIfam pentatricopeptide repeat 505 536 IPR002885 -
Vvi1g0037 967 Gene3D Tetratricopeptide repeat domain 365 482 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0037 Vvi-Chr1 475801 481438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0037 187 595 Glycosyltransferase AT1G05670 22.459 3.10e-18 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0037 - - cic:CICLE_v10033305mg 1275.38