Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0034 ATGGAAGCATCCCAGACACCATATCGACCTAACAGCATCAACACATCTGCCTCATCTCATAACATTGTAAGGTGTAATGCAGATGGACATGCAATTAATCTCTTTCAGGGGCCTGGTTTCCCAGGCCGGAAGAAAAGAGGGCATGGAAGCCGCTCTTGGATAGAAATCGATCAGAATGGGAACTCAAAGACCTTGGAGCTTGATAAGGCAGCTCTTATGAGATATTGTTCTTTGCCTGCTAGAGATCTCCGCCTTTTGGACCCTTTATTCATTTATCCTTCTACAATATTAGGCCGGGAGAAGGCTATTGTGGTCAATCTTGAACAAATTAGGTGTATAATCACAGCTGAAGAGGTTATCCTGATGAATTCCTTGGATGGTTGTGTTGTTCAGTATAAGTCAGAATTGTGCAAACGTCTTCAAAATAATAAAGATCAAGCTGATGACTTGCCTTTTGAATTTCGGGCACTGGAGCTGGCTTTGGAACTAACATGCATGTCTCTTGATGCTCAGGTTAAAGAGCTGGAAATGGAGATATATCCCGTGCTAGATGAACTAGCATCATCCATTAGCACTCTTAATCTAGAACGTGTTCGTAGATTCAAAGGACACCTTCTTGCTCTTACTCAACGAGTTCAAAAGGTTCGTGATGAAATAGAACATCTCATGGATGATGATGGTGACATGGCTGAGATGTACCTGACAGAAAAGAAACAGAGAATGGAGGCTTATCCCTGGAATGACCTACATTCACTGAGTAATGTGTCAGGTGGGACCAGAGTGCTACCAGCATCTGCACCCGTTTCACCGGTGGAGTCGATCAGTGGATCCCAGAGATTGCAAAGGGCTTTTAGCACTATAATGAATTCAAGCAAACATGGAAGCTTTACGGGTTCATCTAATAATGGGGAAAATATCGAACAACTTGAAATGCTACTTGAAGCATATTTTGTTTTCATTGACAATACTCTCAACAAGCTGTTATCGCTCAAGGAATACATTGATGATACTGAAGACTTGATCAACATTAAACTTGGCAATGTTCAGAACCAGCTCATACAATTCGAGTTGCTTCTGACAGCAGCCACCTTCGTGGCCACAATATTTGCTGCAGTGACAGGAGTGTTTGGAATGAACTTCACAGCCACAATTTTTGATTACCCGTCAGCATTTAACTGGGTACTGGTTATCACTGGAGTTATCTGTGGCTTCTTATACTTCTCTTTCTTGTTGTATTTCCGGCACAAGAAAGTTTTTCCATCATAG 1266 0.4202 MEASQTPYRPNSINTSASSHNIVRCNADGHAINLFQGPGFPGRKKRGHGSRSWIEIDQNGNSKTLELDKAALMRYCSLPARDLRLLDPLFIYPSTILGREKAIVVNLEQIRCIITAEEVILMNSLDGCVVQYKSELCKRLQNNKDQADDLPFEFRALELALELTCMSLDAQVKELEMEIYPVLDELASSISTLNLERVRRFKGHLLALTQRVQKVRDEIEHLMDDDGDMAEMYLTEKKQRMEAYPWNDLHSLSNVSGGTRVLPASAPVSPVESISGSQRLQRAFSTIMNSSKHGSFTGSSNNGENIEQLEMLLEAYFVFIDNTLNKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAAVTGVFGMNFTATIFDYPSAFNWVLVITGVICGFLYFSFLLYFRHKKVFPS* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0034 421 Gene3D Magnesium transport protein CorA, transmembrane region 359 417 - -
Vvi1g0034 421 Gene3D - 43 124 - -
Vvi1g0034 421 FunFam Magnesium transporter MRS2-1 41 124 - -
Vvi1g0034 421 Pfam CorA-like Mg2+ transporter protein 312 409 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vvi1g0034 421 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 32 419 IPR039204 -
Vvi1g0034 421 CDD Mrs2_Mfm1p-like 53 418 IPR039204 -
Vvi1g0034 421 Gene3D Magnesium transport protein CorA, transmembrane region 128 352 - -
Vvi1g0034 421 Coils Coil 205 225 - -
Vvi1g0034 421 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 358 410 IPR045863 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0034 Vvi-Chr1 454749 457824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0034 7 420 MRS2 Gene Family AT2G03620 67.542 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0034 K16075 - vvi:100262794 804.668