Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0032 ATGAGATGGGATTGTGGCTTTTGTAAAACCCTAGCTTGGTTGGATCTGTTGTTTCTCTTCTGCGTTTTTTTTTCGGTTTATGGAAGGGTGTTTTCGGGGGAAGTGGTTTCCGAGAGGGAGATTCTTCTCGAATTCAAGAGCTCAGTGTCTGATCCGTATGGGGTTCTGTCCAGCTGGAGCTCAGAGAACTTGGATCACTGTTCTTGGGCCGGCATCTCCTGCGACTCCAATTCTAGGTTTCCGTTTCATGGTTTTGGAATCAGAAGGGATTGTTTTAATGGGAGTGGGAGGTTGGTCGGAGAACTGTCTCCGGTGGTCTCGAAACTCACTGAACTTAGGATTTTTTCGCTTCCTTTTCATGAATTTAGTGGTGAAATTCCTAATGAAATATGGGGTTTAGAAAAGTTAGAGGTACTTGATCTTGAGGGCAATGCATTTACCGGAAATTTGCCTGGCGAATTCTCTGGTTTGAGGAAATTGCAGGTGTTAAACCTTGGATTTAATATAATTGCTGGGGAGATTCCGTTTTCACTGTCAAATTGTGTTAATTTGCGGATTTTGAATTTAGCTGGGAATGAAGTGAACGGAAGAATTCCAGGGTTTATTGGTAGTTTTCCCAAGTTACAGGGGCTTTATTTGTCTCACAATGGGATGATTGGAACAGTTCCGAGCTTGGGGAATTGTAGACGGTTACGAACACTTTTGTTGTTCTCAAATAAGTTTGATGATGTCATTCCTCGTGAGCTCGGTCGTCTGCGGAAGCTTGAGGTTCTAGATTTTGATACCGCTGATGATAAAAATCATTTCCAAGGTTCCATTCCTATGGAAATTACAACCCTTCCAAAGCTAAGACTACTGTGGGCGCCTAGGGCAACACTTGAAGGCAAGTTTCCCAGCAATTGGGGCACTTGCAGCAGCTTGGAAATGCAGACTGAATATGCGTTTCTTGCTGGTGGGAATAGACTCTTTGGATCTTTTCCTGGAAACTTCTTTGGACAATGCAACAGATTGAATGGATTGCTCGTTAATGTCAGCGACAACCGGATATCTGGTGTGTTAGAGACTGGTACAATCTGCAGATCTCTTAAGTTTTTGGATGTCTCTAAGAACCAGATTTCTGGTTCAATACCTCGAGGTCTTGGAGATTTGCAATCTCTCATTGTTCTTGATTTGAGTGGGAACAAATTGCAAGGTCAGATTCCTGTGGAGCTTGGCCAGCTGAAGTATCTTAAGTATCTGTCTTTGGCTGGTAACAACCTTACTGGTGGCATCCCTTCTAGTTTCAAACATGTACGCTCTCTTGAGGTGTTAGAACTTTCTTCAAACTCTCTGTCTGGTGAGATTCCACAAGGTCTTGTAGAGTTGAGAAACCTAACTGTTCTTCTGCTCAACAACAATGAACTCTCGGGACCGATTCTCTCTGATTTGACTCAAGTGAAATCACTCTCTGCATTTAATGCATCCTTTAATGACTTGTCTGGACGATCACAGTTGGACAACAATGTGATGCTTGGAAGTCCTTCTCATCATTCTGGCCACAGGCATTTCCTAGCTGAGCAGTCTTTGGATCATTCAAAGAGCAATGGGAGTTCAGCCACTCCATTACAAAGTTCTTCTGAAGATGATGATGATGATGATGGGCTCAGTTCTATTGAGATTGCATCCATAATTTCTGCATCTGCTATTTTTTCTGTTCTTGTGGCTTTGCTCGTTCTCTTCTTTTACACGAGAAAATGGATCCCCAAGTCCCGGGTTCAGGGTTCTGAGACAAGGGAAATTACAGTTTTCACTGATATTGGTGTTCCATTGACATTTGAGAATATAGCTTGGGCAACTGGGAATTTCAATGCCAGCAACTGCATTGGGAATGGAGGTTTTGGTGCCACTTATAAGGCTGAGATTTCACCAGGAGCCCTAGTGGCTGTGAAGAGACTGGCTGTTGGGAGGTTCACTCAAGGTGTTCAGCAGTTTCATGCAGAGGTTAAAACCCTTGGAAGGATTCGACACCCAAATCTCGTAACTTTAATAGGTTACCATGCTAGTAAAACAGAGATGTTCCTGATATACAATTATTTGCCTGGTGGTAATTTGGAAAATTTTATCCAGGAAAGATCTGCAACAGCTGTTAATTGGAAGATTCTTCACAAGATTGCTTTGCATATAGCCAGTGCACTTGCATATCTGCATGACCAATGTAGTCCACGGGTCCTCCACCGTGATGTCAAGCCTAGTAATATCTTGTTGGATAATGACTTTAATGCTTATTTGTCAGACTTTGGATTATCTAGGCTATTGGGGACTTCTGAAACACATGCAACAACTGGTGTGGCAGGAACATTTGGGTATGTAGCTCCAGAATATGCTATGACTTGTCGTGTGTCCGAGAAGGCTGATGTTTACAGCTATGGTGTAGTGCTCCTTGAGCTGATTTCAGATAAGAAAGCATTGGACCCTTCATTTTCTTCACATGCAAATGGCTTCAACATTGTTTCATGGGCATGCATGCTATTGCGGCAGGGTCAGGCGAAGGATGTTTTCAATGAAAGGCTATGGGATTCAGGTCCTCATGATAACCTGGTAGATGTACTTCATTTGGCTGTTATGTGCACTGTTGAGTCATTCTCCATCAGGCCAACCATGAAGCGGGTAGTGCAACGGTTGAAACAACTGCAGCCGCCCTCAAACTAG 2688 0.4323 MRWDCGFCKTLAWLDLLFLFCVFFSVYGRVFSGEVVSEREILLEFKSSVSDPYGVLSSWSSENLDHCSWAGISCDSNSRFPFHGFGIRRDCFNGSGRLVGELSPVVSKLTELRIFSLPFHEFSGEIPNEIWGLEKLEVLDLEGNAFTGNLPGEFSGLRKLQVLNLGFNIIAGEIPFSLSNCVNLRILNLAGNEVNGRIPGFIGSFPKLQGLYLSHNGMIGTVPSLGNCRRLRTLLLFSNKFDDVIPRELGRLRKLEVLDFDTADDKNHFQGSIPMEITTLPKLRLLWAPRATLEGKFPSNWGTCSSLEMQTEYAFLAGGNRLFGSFPGNFFGQCNRLNGLLVNVSDNRISGVLETGTICRSLKFLDVSKNQISGSIPRGLGDLQSLIVLDLSGNKLQGQIPVELGQLKYLKYLSLAGNNLTGGIPSSFKHVRSLEVLELSSNSLSGEIPQGLVELRNLTVLLLNNNELSGPILSDLTQVKSLSAFNASFNDLSGRSQLDNNVMLGSPSHHSGHRHFLAEQSLDHSKSNGSSATPLQSSSEDDDDDDGLSSIEIASIISASAIFSVLVALLVLFFYTRKWIPKSRVQGSETREITVFTDIGVPLTFENIAWATGNFNASNCIGNGGFGATYKAEISPGALVAVKRLAVGRFTQGVQQFHAEVKTLGRIRHPNLVTLIGYHASKTEMFLIYNYLPGGNLENFIQERSATAVNWKILHKIALHIASALAYLHDQCSPRVLHRDVKPSNILLDNDFNAYLSDFGLSRLLGTSETHATTGVAGTFGYVAPEYAMTCRVSEKADVYSYGVVLLELISDKKALDPSFSSHANGFNIVSWACMLLRQGQAKDVFNERLWDSGPHDNLVDVLHLAVMCTVESFSIRPTMKRVVQRLKQLQPPSN* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0032 895 Gene3D Ribonuclease Inhibitor 400 512 IPR032675 -
Vvi1g0032 895 Gene3D Ribonuclease Inhibitor 35 198 IPR032675 -
Vvi1g0032 895 MobiDBLite consensus disorder prediction 523 537 - -
Vvi1g0032 895 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 23 889 - -
Vvi1g0032 895 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 579 691 - -
Vvi1g0032 895 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 261 522 - -
Vvi1g0032 895 SUPERFAMILY Protein kinase-like (PK-like) 593 887 IPR011009 -
Vvi1g0032 895 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 35 202 - -
Vvi1g0032 895 SMART serkin_6 615 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0032 895 Gene3D Transferase(Phosphotransferase) domain 1 692 892 - -
Vvi1g0032 895 MobiDBLite consensus disorder prediction 523 546 - -
Vvi1g0032 895 CDD STKc_IRAK 621 890 - -
Vvi1g0032 895 ProSiteProfiles Protein kinase domain profile. 615 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0032 895 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 692 895 - -
Vvi1g0032 895 Pfam Protein kinase domain 618 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0032 895 Pfam Leucine rich repeat 409 468 IPR001611 GO:0005515
Vvi1g0032 895 SMART LRR_typ_2 431 455 IPR003591 -
Vvi1g0032 895 SMART LRR_typ_2 133 156 IPR003591 -
Vvi1g0032 895 SMART LRR_typ_2 157 181 IPR003591 -
Vvi1g0032 895 SMART LRR_typ_2 383 407 IPR003591 -
Vvi1g0032 895 Gene3D Ribonuclease Inhibitor 199 399 IPR032675 -
Vvi1g0032 895 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Vvi1g0032 895 Gene3D Phosphorylase Kinase; domain 1 578 691 - -
Vvi1g0032 895 ProSitePatterns Protein kinases ATP-binding region signature. 621 643 IPR017441 GO:0005524
Vvi1g0032 895 SUPERFAMILY RNI-like 101 494 - -
Vvi1g0032 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 736 748 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0032 Vvi-Chr1 442128 445496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0032 119 894 Receptor kinase-like Gene Family AT3G02130 55.915 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Vvi1g0032 Pkinase 1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0032 - - vvi:100854554 1129.78