Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0030 ATGTCTCTGTGTGTTGGGGGTATTGTTTTATTTACTACTTCATTTAGTTTTTTCTTGTTTCCAGAAAGCACTCATGTTCTTGATCACCCTAAGTCGAATAACACTAGTCCCGTGGAAGAAGATGCTGCCGATGATGAAGAAGTATGTGATCTAACAGAAAATGAAGGGGTACCAGTTTCTGAAGAAAAGGTTGTTTGTGAAATCCCAGTTGATCCAAGTAAAGATGTTCACCCAGTCTCTGAGACAGTTTCTGCTGTCATTAATGAGGATGCACCAAAGAAGTCTTATGCTTCCATAGTGAAGGTGATGAAGGGGGAGATGGCTACAAGTTCAGTTCATGTACCTCCTGGTGCTGTAAGAGCTGCTAAAAGTAATGCAAAGGTTTCACCTGCAAACATTGAGCGACATGTAAGCACATCTGCAGCACCCCGAGCACAAGTTCATAGTAGCAACAGTGCCCCCAGTGGCAACAGTGCCCCCAGTGGTAACAATGCTCCCAGTAGCAACAGTACCCCCACTAATAATGGTGCCCCTAGAAGCAACATTTCTCCAGAAAGTGGCCAGGATCATCCTGAAGTTGGTGGCCATTCCATATACATCGGGAATCTGCCTTTGAATGCGACTGTTCAACAAGTTGAAGGGGTGTTTAAGAAATTTGGGCCCATCATAAGTGGTGGTATCCAAATTAGAAGTTACAAAGGCTATGGTTTTGGTTTTGTTGAGTTTGAATCCTTGGATTCCATGCATAGTGCAATAAAGGCTTCTCCTATTACAATTGGCGGTCACCAGGCTACTATTGAGCAGAAGAAGACTACCCTTCGAGTTGGCAATGACAGGGGGAGGCCCTCATCAGGAAGAGGTGGATACCGAAACGATAACTTCAGGGGCCGTGGGAACTTTGGTGGACGCGGCTATGGCAGGAACGAGTTTGGCTACCGGGGCGAGTTCTATGGACGAGGTCGGGCCCCTAATGGACGCAATAGCGACCCCTACCAGAGGGATTATCAGAACAGGGGTGGAAGAGTTTAA 1029 0.4636 MSLCVGGIVLFTTSFSFFLFPESTHVLDHPKSNNTSPVEEDAADDEEVCDLTENEGVPVSEEKVVCEIPVDPSKDVHPVSETVSAVINEDAPKKSYASIVKVMKGEMATSSVHVPPGAVRAAKSNAKVSPANIERHVSTSAAPRAQVHSSNSAPSGNSAPSGNNAPSSNSTPTNNGAPRSNISPESGQDHPEVGGHSIYIGNLPLNATVQQVEGVFKKFGPIISGGIQIRSYKGYGFGFVEFESLDSMHSAIKASPITIGGHQATIEQKKTTLRVGNDRGRPSSGRGGYRNDNFRGRGNFGGRGYGRNEFGYRGEFYGRGRAPNGRNSDPYQRDYQNRGGRV* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0030 342 MobiDBLite consensus disorder prediction 317 342 - -
Vvi1g0030 342 FunFam Ras GTPase-activating protein-binding protein 1 184 308 - -
Vvi1g0030 342 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 262 IPR000504 GO:0003723
Vvi1g0030 342 CDD RRM_SF 198 254 - -
Vvi1g0030 342 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 280 IPR000504 GO:0003723
Vvi1g0030 342 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 25 325 IPR039539 -
Vvi1g0030 342 Gene3D - 184 309 IPR012677 -
Vvi1g0030 342 SMART rrm1_1 197 267 IPR000504 GO:0003723
Vvi1g0030 342 MobiDBLite consensus disorder prediction 272 300 - -
Vvi1g0030 342 MobiDBLite consensus disorder prediction 121 195 - -
Vvi1g0030 342 SUPERFAMILY RNA-binding domain, RBD 195 299 IPR035979 GO:0003676
Vvi1g0030 342 MobiDBLite consensus disorder prediction 142 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0030 Vvi-Chr1 423821 428372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0030 198 259 Eukaryotic Initiation Factors Gene Family AT2G36660 38.095 8.91e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0030 K24983 - vvi:100250757 537.339