Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0025 ATGGGTCTGCAAGTGACTTTTACTAGAATTTTTCTGTTGATAATCTTGTTTGTTTGGGTCAGAGATGCTCAAGGTCAACTGAAGGTCTTCAATGTGATGAACTATGGTGCAATTGCAAATGGACATTATGACAACAGCGAGGCATTGGGGAGAGCATGGAATGAGGCGTGCCATTGGAAAGGAACCGGTGTAGTACTGATTCCAAGGGGAACCTACATGGTGCACCCTGTGAAATTCCAGGGTCCATGCAGTGGTCGAACCATGTTCCTGAACACAGGAGAGGTGTTGGCTCCTACTGACCCAGCTTTAATCCACGCTGATAATTGGATTGCCTTTCAAGAAATTGATGGGTTGAGGGTCAGTGGAGGCGGGTCATTTAATGGCCAGGGAGAGAAGGTTTGGCACAATAACGTTTGCCATAAGAACTACAACTGCAAACCCCTTTCCTCATCATTGTCTTTCAAATTTGTCACAAATGGCAGGATTGATCACATAACATCAATCAACAGCAAGATGTTCCATTTCAATATATATGATAACCAGAAGATAAGCATCAACCACGTTAAAATATTGGCCCCTGCTGAGAGCCCCAACACTGATGGAATCCATATTGGAAGATCAAACGACATCAGAATTACAAATTCAGAGATACGAACCGGAGATGACTGCATATCCTTGAAACAAGGCAGTAGAGACATCCACATTCAAAACGTTCAATGTGGGCCTGGCCATGGAATTAGTGTTGGAAGTCTAGGCAAGGACGAGGGGGAAGAAGAAGTCAGGGGAATAACAGTAAGAAACTGCACCTTTCAGGGCAGCGATAACGGTCTGAGAATCAAAACTTGGGCGGCCTCTACCAGAAACATTGCATCAGACTTCACATTTGAAGACATTGTCGTCGAAAATGTCCGAAACCCCATCAACATCGATCAAGAGTACTGTCCCCACCCTCCTTGCAATGAGGGTGAATCACAAGTTGAAATCAAAAATGTGAAATTCAGAAACATCCGGGGCACTTCAAGTACAAAAGTTGCAGTGAGCCTCATCTGCAGCAGTAGAATTCCATGTTCCGACATCGAGCTCCATAACATCGACTTAGTGTACCATGACCAGGGAGGACCTGCAACTTCAAGCTGTCGACATGTCAATGGTGTTTCTTCTGGGGTACAAAGACCTCCCAGCTGCATATAG 1191 0.4492 MGLQVTFTRIFLLIILFVWVRDAQGQLKVFNVMNYGAIANGHYDNSEALGRAWNEACHWKGTGVVLIPRGTYMVHPVKFQGPCSGRTMFLNTGEVLAPTDPALIHADNWIAFQEIDGLRVSGGGSFNGQGEKVWHNNVCHKNYNCKPLSSSLSFKFVTNGRIDHITSINSKMFHFNIYDNQKISINHVKILAPAESPNTDGIHIGRSNDIRITNSEIRTGDDCISLKQGSRDIHIQNVQCGPGHGISVGSLGKDEGEEEVRGITVRNCTFQGSDNGLRIKTWAASTRNIASDFTFEDIVVENVRNPINIDQEYCPHPPCNEGESQVEIKNVKFRNIRGTSSTKVAVSLICSSRIPCSDIELHNIDLVYHDQGGPATSSCRHVNGVSSGVQRPPSCI* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0025 396 ProSitePatterns Polygalacturonase active site. 237 250 IPR000743 GO:0004650|GO:0005975
Vvi1g0025 396 Gene3D - 20 394 IPR012334 -
Vvi1g0025 396 PANTHER - 28 383 - -
Vvi1g0025 396 Pfam Glycosyl hydrolases family 28 64 383 IPR000743 GO:0004650|GO:0005975
Vvi1g0025 396 SUPERFAMILY Pectin lyase-like 15 396 IPR011050 -
Vvi1g0025 396 FunFam Pectin lyase-like superfamily protein 19 393 - -
Vvi1g0025 396 SMART pbh1 207 228 IPR006626 -
Vvi1g0025 396 SMART pbh1 180 206 IPR006626 -
Vvi1g0025 396 SMART pbh1 260 281 IPR006626 -
Vvi1g0025 396 SMART pbh1 290 311 IPR006626 -
Vvi1g0025 396 SMART pbh1 230 250 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0025 Vvi-Chr1 376807 378298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0025 11 396 Glycoside Hydrolase AT1G17150 44.845 9.20e-121 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0025 K01213 - vvi:100254136 825.854