LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g0022	ATGGTTTCCATCGTAAGGCGCGCTATGAACAACACTGATACAAACTTGGTGCTCTTCCGCATCCTTGCTTCAATCCATGCCATCTCCATTGTCATCGCTGTCACAGCTTCATCATCACCCTACACTCCCGTGGAGAACATAGCTCTAGATTGTGGAAGCCATGGCCACAGCACCGCCCCTGATGGCCGCAAATGGACTAGTGACACCGGTTCAAAATTCATATGCTCCCAACTCAATGCATCTTCCATCTCCATGGCCTCCACCCAAGACTCCGTTCCACTGGTTCCTTACATGACTGCTCGTATCTTCACCTCCCAATTCACTTACGCCTTCCCGCTATCCCCGGGCCCCAAGTTCCTTCGCCTTCACTTCCATCCGGCCTCCTACTCCAATCTCGATCCCTCCCACGCCTTCTTCTCCGTCACGGCAAACCACTACACGCTGCTTCACAACTTCAGCGCTTGGCTCACTGCTGGCTTTCTTAATCAAACCCATTTCAGTAAGGAGTATTGTGTTTGGGTGAGCTCGGAGCAGCTGCTGAATCTCACTTTCGCTCCAGTTGCAGGTGCTTTTGCCTTTGTGAATGGCATCGAGGTTGTTTCCATGCCCACGGATCTTTACCTCAAAGGTGAAGATATCTCCATGGCTGGGCAATCGCAGCCATTCACGATCAACAATGGCACTGCACTCGAGATGGTTTATAGATTAAACGTGGACGGGCAAGCCATTTCGGCCGTCGACGACACCGGCATGTTCCGAGAATGGTCTCAGGACGACTCCTTTATCTTCGGACCCGCAGCTGGGCAAGATCCATTTCATCTCACAATTAAGATCAAATTCACCAAGGTTCCACCCTATACTGCGCCTGAGATTCTCTACAGGACTGCTCGCTCCATGGGGATGAACAGGAATGTCAACGAGAACTACAATCTGACGTGGATATTCCCCGTGGATTCAGGGTTTTACTATCTGGTGAGGCTCCATTTCTGCGAGATTGCGCCGGAGATAACTGGGATCAATCAGAGGGTGTTTGAGATATTTTTGAATAACCAGACGGCCGACGATCAGATGGATATTATGGTTTATGCCGATGGTATCGGAGTACCGATTTTCAGGGAATTCGTGGTGATAGTGCCGGAAGCAGGGGGAGTCCGCCAAGAGCTATGGCTGGCGTTGCACCCCAACACCGGAGCTCATGCCAAGTACTCCGATGCTCTTTTGAACGGTTTGGAGATATTCAAATTGAACGCAAGCGACGGAAACCTCGCCGGACCCAATCCTATCCCTAAACATAAGTCTAAAGCCGAAGTGGATCAAATTGAACCCATTCAAACGGCGGATCGTTGGAATAAGGTCCGAAAACCATTGATTTTCGCCGGAGTAGTGGTGGGCGGGGTTGTTGCCGTAGCTTTGATTTTATTTTTCTTCATTCTCCGGCGCCTGGGAGCGAAGAAGAAGGCAAGGACTGCAGGCACGAGCCGAGGAACATCCTGGTGGACTCCATTCTCGCAATCCGGCGCCGAGTCAACCAAGACGAGATATACGCCTCGGCCGTCGGAGCTGTGCAGGCATTTTTCGCTGGAGGAGATGCTTTCAGCGACGAACGACTTCAGCGACGATTTCCTCATCGGCGTCGGCGGCTTCGGAAACGTCTACAGGGGCGCCATCCACGGCGGAGCAACCCCAGTCGCGGTGAAACGATTGAACCCCACGTCCCAGCAAGGAACGCGCGAGTTCCGCACAGAAATTGAGATGCTCTCGCAGCTCCGCCACATCCACCTGGTTTCTCTAATCGGCTACTGCGCGGAACACGGGGAGATGATCCTCGTCTACGACTTCATGGCCAACGGCGCCCTCCGGGATCATCTCTACGGCACTGATAACCCTCCTCTCCCATGGAAGAAGCGGCTCGATATCTGCATTGGCGCGGCTAAGGGACTGCACCATCTGCATACAGGCGCGAAGCACACGATCATCCACAGAGACGTGAAGACCGCCAACATACTGCTTGATGAGAACTGGGTGGCGAAGGTCTCTGATTTCGGATTATCAAAGTTGGGACCCGCCGGCGGGTCCGAGAGCCACGTCAGCACCGTGGTGAAGGGCAGCTTCGGGTACATAGACCCGGAGTACTACCTCCTCCAGCGGCTGACGGATAAGTCTGACGTGTACTCATTCGGGGTGGTTCTGTTTGAGGTTCTGTGCGGCAGACCGCCGGTGGAAAAGCACCTAGAGGGGAGAGAGGCGAGCTTGGTGGAGTGGGGAAAGGCCCACTACAAGAGCGGGAGGCTTGAGGAGATCGTGGACAATCGGGTGAGGAATGAGATTGGGGCGGAGTGTCTAAGGAAGTTTGGGGAGATAGCGACAAGCTGCGTGGGGGATCGGGGGACGGAGCGGCCGGCGATGGGTGATGTGATGTGGGGGCTTGAATTCGCGATGCAGTTGCAGAAGAAGAGCGGGGAGGTAAGTGAGATAGAAGAAGGATTGGAGGGTGAAAGGAGGTGGAATGGGCATGGTGGGGGTGGGGGTGGGGGTGGAGGTGGTGGAGGTGAATCCACATTGGGGATGTCCGGAGATGTCTTCTCTGAGATCAGAAATCCCCAAGGCCGATAA	2613	0.5408	MVSIVRRAMNNTDTNLVLFRILASIHAISIVIAVTASSSPYTPVENIALDCGSHGHSTAPDGRKWTSDTGSKFICSQLNASSISMASTQDSVPLVPYMTARIFTSQFTYAFPLSPGPKFLRLHFHPASYSNLDPSHAFFSVTANHYTLLHNFSAWLTAGFLNQTHFSKEYCVWVSSEQLLNLTFAPVAGAFAFVNGIEVVSMPTDLYLKGEDISMAGQSQPFTINNGTALEMVYRLNVDGQAISAVDDTGMFREWSQDDSFIFGPAAGQDPFHLTIKIKFTKVPPYTAPEILYRTARSMGMNRNVNENYNLTWIFPVDSGFYYLVRLHFCEIAPEITGINQRVFEIFLNNQTADDQMDIMVYADGIGVPIFREFVVIVPEAGGVRQELWLALHPNTGAHAKYSDALLNGLEIFKLNASDGNLAGPNPIPKHKSKAEVDQIEPIQTADRWNKVRKPLIFAGVVVGGVVAVALILFFFILRRLGAKKKARTAGTSRGTSWWTPFSQSGAESTKTRYTPRPSELCRHFSLEEMLSATNDFSDDFLIGVGGFGNVYRGAIHGGATPVAVKRLNPTSQQGTREFRTEIEMLSQLRHIHLVSLIGYCAEHGEMILVYDFMANGALRDHLYGTDNPPLPWKKRLDICIGAAKGLHHLHTGAKHTIIHRDVKTANILLDENWVAKVSDFGLSKLGPAGGSESHVSTVVKGSFGYIDPEYYLLQRLTDKSDVYSFGVVLFEVLCGRPPVEKHLEGREASLVEWGKAHYKSGRLEEIVDNRVRNEIGAECLRKFGEIATSCVGDRGTERPAMGDVMWGLEFAMQLQKKSGEVSEIEEGLEGERRWNGHGGGGGGGGGGGGESTLGMSGDVFSEIRNPQGR*	871

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g0022	870	ProSitePatterns	Protein kinases ATP-binding region signature.	543	566	IPR017441	GO:0005524
	Vvi1g0022	870	MobiDBLite	consensus disorder prediction	831	870	-	-
	Vvi1g0022	870	Gene3D	Transferase(Phosphotransferase) domain 1	614	829	-	-
	Vvi1g0022	870	SMART	serkin_6	537	812	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi1g0022	870	FunFam	FERONIA receptor-like kinase	46	203	-	-
	Vvi1g0022	870	Gene3D	-	46	204	-	-
	Vvi1g0022	870	Gene3D	-	228	417	-	-
	Vvi1g0022	870	ProSitePatterns	Peroxidases active site signature.	116	127	IPR019794	GO:0004601
	Vvi1g0022	870	PANTHER	OS03G0124300 PROTEIN-RELATED	25	484	IPR046957	GO:0004672
	Vvi1g0022	870	Pfam	Malectin-like domain	49	414	IPR024788	-
	Vvi1g0022	870	Gene3D	Phosphorylase Kinase; domain 1	502	613	-	-
	Vvi1g0022	870	SUPERFAMILY	Protein kinase-like (PK-like)	512	812	IPR011009	-
	Vvi1g0022	870	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	658	670	IPR008271	GO:0004672\|GO:0006468
	Vvi1g0022	870	FunFam	FERONIA receptor-like kinase	228	416	-	-
	Vvi1g0022	870	CDD	STKc_IRAK	543	805	-	-
	Vvi1g0022	870	FunFam	Receptor-like protein kinase FERONIA	614	830	-	-
	Vvi1g0022	870	Pfam	Protein tyrosine and serine/threonine kinase	543	805	IPR001245	GO:0004672\|GO:0006468
	Vvi1g0022	870	FunFam	Receptor-like protein kinase FERONIA	509	613	-	-
	Vvi1g0022	870	ProSiteProfiles	Protein kinase domain profile.	537	812	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g0022	Vvi-Chr1	334518	337130	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g0022	19	870	Receptor kinase-like Gene Family	AT3G51550	50.501	0.0	814

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Vvi1g0022		Malectin_like	6.9e-45	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi1g0022	-		-	vvi:100242441	1694.86