Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0020 ATGGCTTCTCTCTCCTTCACACAATTTCTCTCTCTACCCAGGTGGCACTCGAATTTACCCCTTTACACATCATTGAACTTGATGCAAATTCAGGATATTCGACTGCAGAATAGATGGGAACTTACAGCTGTGTCTAAGAAAAAAATTGTGGAGTCCTTGGCAGTAACTGAAGAACCAGTTGTTGTAAAGAAGAAATCCAAACAATCTCCTACACGAAGTAGAAAAAAGGCAGTACCTGACACCCCAGAGGAGAATTCTGAGTTGTCAGTGAAGAGTGATGTTACAGAAGTGGTAGTCAATACTCCATCTGCATCAAGTGACGCTTCCAAGAAAACCCCACGAAGGACTCGAAGGAAAGCTGCCTCTAGTTCTACTGGCATCATGGAAGAGAGAATTGAGAAGAAGGTGAGGACACGAAGGAAGACTACAAAGAAGGTTGACAACATAGAAGATCAAGGTGGTGAGACTGACCTTAGTGATCACGAAGGTTCCACATTCACTGCAAAGGTGGAGGATGAAGAGGAGGAAGACCTAGATCTTGGAAAAGATGATGAAGATATTAGCTCCACATATGGTTGGCCTCCTCTTGTTTGTTGCTTTGGAGCTGCTCAACATGCTTTTGTGCCGTCAGGAAGACCAGCCAACAGACTTATAGACCATGAAATCCATGAAAGAATGAAGGATACATTTTGGAACCCAGAAAAATTTGTTCGGGCTCCTGGTGGATCTGCAGGTAGTGTTGCAGTAGCTCTTGCAAGCTTAGGTGGTAAGGTAGCCTTCATGGGAAAACTCGGGGATGATGACTTCGGTCAGACTATGCTATATTATATGAATGTGAGCAATGTTCAAACTCGATCTGTTTGTATTGATGGTAAAAAGGCAACAGCAGTATCACAAATGAAGATTGGAAGGAGGGGGGGCTTGAAAATGACTTGTGTCAAACCATGTGCTGAGGATTCTTTGTCAAGGTCTGAGATCAATATTGATGTGCTGAGGGAGGCAAAGATGTTCTACTTCAACACATCATCCCTGCTTGATCAGAACATGGCATCAACAACATTCCGTGCAATCAAAATTTCTAAGAAACTAGGAGGGGTTATCTTTTATGATCTAAATCTTCCGTTGCCACTCTGGCAATCTGGCCAAGAAACCAAGAAGTTCATACAGCAAGCATGGAATCTTGCAGATATTATTGAGGTTACCAAGCAAGAACTTGAATTTATATGTGGGATCAAGTCCACTGAGAATTTTGACACCAAGGATAACAACAATTCTAAGTTTGTTCATTATGATCCAGTAGTGGTTGGACCTCTTTGGCATGAGAATCTCAAGGTTTTGTTTGTAACAAATGGGACTTCTAAGATTCATTTCTATACAAAGGAGGAAAATGGTGCAGTTCATGGGATGGAGGATGCACCCATTACACCTTTCACTTGTGACATGTCTGCATCTGGAGATGGTATTGTCGCAGGTCTCATGAGGATGTTAACAGTGCAGCCGCATCTCATCACTGATAAGGGATACTTGGAGCATTCAATCAGGTATGCCATCGATTGTGGAGTCATAGACCAATGGTTACTTGCACGACAACGTGGCTACCCTCCTAAAGAAGATGTGGAAGAAGAAGTGGTCCCTGATCAAGATGGTATAAGATCGATAACAGAGAAGGAATACCGCACATTAGCACCTGTAAGTTGA 1698 0.427 MASLSFTQFLSLPRWHSNLPLYTSLNLMQIQDIRLQNRWELTAVSKKKIVESLAVTEEPVVVKKKSKQSPTRSRKKAVPDTPEENSELSVKSDVTEVVVNTPSASSDASKKTPRRTRRKAASSSTGIMEERIEKKVRTRRKTTKKVDNIEDQGGETDLSDHEGSTFTAKVEDEEEEDLDLGKDDEDISSTYGWPPLVCCFGAAQHAFVPSGRPANRLIDHEIHERMKDTFWNPEKFVRAPGGSAGSVAVALASLGGKVAFMGKLGDDDFGQTMLYYMNVSNVQTRSVCIDGKKATAVSQMKIGRRGGLKMTCVKPCAEDSLSRSEINIDVLREAKMFYFNTSSLLDQNMASTTFRAIKISKKLGGVIFYDLNLPLPLWQSGQETKKFIQQAWNLADIIEVTKQELEFICGIKSTENFDTKDNNNSKFVHYDPVVVGPLWHENLKVLFVTNGTSKIHFYTKEENGAVHGMEDAPITPFTCDMSASGDGIVAGLMRMLTVQPHLITDKGYLEHSIRYAIDCGVIDQWLLARQRGYPPKEDVEEEVVPDQDGIRSITEKEYRTLAPVS* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0020 565 PANTHER HEXOKINASE FAMILY MEMBER 196 540 - -
Vvi1g0020 565 FunFam Fructokinase-like 2, chloroplastic 197 547 - -
Vvi1g0020 565 SUPERFAMILY Ribokinase-like 225 541 IPR029056 -
Vvi1g0020 565 Pfam pfkB family carbohydrate kinase 230 520 IPR011611 -
Vvi1g0020 565 Coils Coil 132 152 - -
Vvi1g0020 565 MobiDBLite consensus disorder prediction 91 109 - -
Vvi1g0020 565 MobiDBLite consensus disorder prediction 143 168 - -
Vvi1g0020 565 MobiDBLite consensus disorder prediction 59 177 - -
Vvi1g0020 565 MobiDBLite consensus disorder prediction 73 90 - -
Vvi1g0020 565 CDD bac_FRK 196 525 - -
Vvi1g0020 565 Gene3D - 197 549 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0020 Vvi-Chr1 305943 311406 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0020 - - vvi:100247573 1047.34