Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0016 ATGGCACTCTTGGTATCCTATAAGCAAATGCTTGAAATTGAACCAGCTTTGTTATATGAGGCATTCAAACCAGAGTTTGATAAGCTTGTGATAGGAACACTGGCGATGCCCATCAACCTTCCTGGCACAAACTATTACTTTGGCTTCCAGGGAAGGAAGAATGTGCTCAAAATGCTGAGAAAAGTGATAGCAGAGAGAAGAGCTTCTTCAGCGACCCATAATGACATGCTTGGTGACCTCCTAAGCAAGGAAGACCCAAAGCACAGTCTACTCAGCGATGAGGAGATACTTGATCAGATCATAACAATTCTGTATTCGGGTTACGAGACCGTCTCAAAAACTGCCATGATGTCTATCAAATATCTCCATGATAATCCAAAAGCCCTTCAACAACTTAGAGAAGAGCATTTAGCCATTCGCAAAGGAAAAAGCCCAGAGGATCCAATCGGCTGGACCGAGTACAAATCCATGACCTTCACTCGAGCTGTGATCCTTGAGACCTCCAGATTGGATACCATAGTTAATGGAGTATTGAGGGAGACAACCAATGATATTGAAGTGAATGGATATGTCATTCCAAAAGGATGGATGATATATGTTTATACAAGGGAGACCAACTATGATCCACTGCAGTATCCAGAGCCTTTCACCTTCAATCCATGGCGATGGCTGGATAAGAGCCTGGAGTCTCAGAATTACTGCTTCCTGTTTGGAGCAGGAAACCGAGTTTGTCCAGGAAAGGAATTGGGAATTGTTAAGATCTCTATGTTCCTTCACCACCTTGTTACCAGATACAGGTGGGAAGAAGTTGGGGATGCTGAAATTGCCAAGTTCCCAAGAGTTGAAGCACCAAAGGGCCTGCATATAAAGATAACTAAGTACTAG 885 0.4339 MALLVSYKQMLEIEPALLYEAFKPEFDKLVIGTLAMPINLPGTNYYFGFQGRKNVLKMLRKVIAERRASSATHNDMLGDLLSKEDPKHSLLSDEEILDQIITILYSGYETVSKTAMMSIKYLHDNPKALQQLREEHLAIRKGKSPEDPIGWTEYKSMTFTRAVILETSRLDTIVNGVLRETTNDIEVNGYVIPKGWMIYVYTRETNYDPLQYPEPFTFNPWRWLDKSLESQNYCFLFGAGNRVCPGKELGIVKISMFLHHLVTRYRWEEVGDAEIAKFPRVEAPKGLHIKITKY* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0016 294 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 237 246 IPR017972 GO:0005506|GO:0016705
Vvi1g0016 294 PRINTS P450 superfamily signature 162 173 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0016 294 PRINTS P450 superfamily signature 235 244 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0016 294 PRINTS P450 superfamily signature 244 255 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0016 294 PRINTS P450 superfamily signature 106 123 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0016 294 SUPERFAMILY Cytochrome P450 27 292 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0016 294 Gene3D Cytochrome P450 3 293 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0016 294 Pfam Cytochrome P450 52 271 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0016 294 PANTHER CYTOCHROME P450 26 15 271 - -
Vvi1g0016 294 PRINTS E-class P450 group I signature 244 267 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0016 294 PRINTS E-class P450 group I signature 201 225 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0016 294 PRINTS E-class P450 group I signature 234 244 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0016 294 PRINTS E-class P450 group I signature 161 179 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0016 294 PRINTS E-class P450 group I signature 95 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0016 Vvi-Chr1 263082 269146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0016 1 294 Cytochrome P450 AT5G38970 61.905 8.56e-133 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0016 K09590 - vvi:100262943 600.512